BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00067 (794 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 71 1e-12 U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 32 0.41 Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.8 AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.8 AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.8 AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 5.1 Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical pr... 28 6.7 >AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7 protein. Length = 244 Score = 70.9 bits (166), Expect = 1e-12 Identities = 29/47 (61%), Positives = 39/47 (82%) Frame = +2 Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649 GYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+ED Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185 Score = 70.9 bits (166), Expect = 1e-12 Identities = 30/41 (73%), Positives = 32/41 (78%) Frame = +1 Query: 649 LIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771 L HEI TVG FK A+NFLWPFKLNNPTGGW KKT H+ G Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEG 226 Score = 66.9 bits (156), Expect = 2e-11 Identities = 29/40 (72%), Positives = 34/40 (85%) Frame = +3 Query: 399 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518 RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AW P Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYP 141 Score = 62.5 bits (145), Expect = 3e-10 Identities = 27/50 (54%), Positives = 39/50 (78%) Frame = +1 Query: 256 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 405 V+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK K Sbjct: 54 VQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103 Score = 30.7 bits (66), Expect = 1.3 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 107 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 253 +KK+P VPE+VLK Q + + +KK + FKRAE+ Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEK 52 >U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical protein W06A11.4 protein. Length = 347 Score = 32.3 bits (70), Expect = 0.41 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +2 Query: 218 KKKREIFKRAEQSSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 397 KK+R++ ++ + SR ASR +K K A +T P +PN + S S S ++ + Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80 Query: 398 P*SSATV*TAP 430 S + + P Sbjct: 81 RSSQVKIRSVP 91 >Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein C05C12.3 protein. Length = 1694 Score = 29.1 bits (62), Expect = 3.8 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 327 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461 L R Q+ PW P FT + V+ LF+L + ++ +F R N Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390 >AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. Length = 1694 Score = 29.1 bits (62), Expect = 3.8 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 327 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461 L R Q+ PW P FT + V+ LF+L + ++ +F R N Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390 >AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP homologous cationchannel protein. Length = 1681 Score = 29.1 bits (62), Expect = 3.8 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 327 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461 L R Q+ PW P FT + V+ LF+L + ++ +F R N Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377 >AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical protein F36F12.1 protein. Length = 518 Score = 28.7 bits (61), Expect = 5.1 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +3 Query: 318 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 440 +Q++R G Q+GI PW P F++V R L+ R ++ N Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250 >Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical protein E03H4.7 protein. Length = 624 Score = 28.3 bits (60), Expect = 6.7 Identities = 22/83 (26%), Positives = 37/83 (44%) Frame = -3 Query: 765 RIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEVI 586 R+ L+ SW+ P EI L + ++L+D + Q+ ++ ++ + Sbjct: 513 RVNTKLIDRIASWVKDGVDPVEIDN--RLGQSKDNLIDPETYQLAR---KRYAELVKDFK 567 Query: 585 GIRCPLSLANPRLYTNSRTLFKL 517 G RC L NP Y NS F+L Sbjct: 568 G-RCTLIDFNPEFYNNSTGTFRL 589 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,768,750 Number of Sequences: 27780 Number of extensions: 372137 Number of successful extensions: 959 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 959 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1935274832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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