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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00067
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    71   1e-12
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   3.8  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   3.8  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 29/47 (61%), Positives = 39/47 (82%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
           GYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+ED
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 30/41 (73%), Positives = 32/41 (78%)
 Frame = +1

Query: 649 LIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
           L HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+  G
Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEG 226



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = +3

Query: 399 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AW  P
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYP 141



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/50 (54%), Positives = 39/50 (78%)
 Frame = +1

Query: 256 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 405
           V+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 54  VQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 107 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 253
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEK 52


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 218 KKKREIFKRAEQSSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 397
           KK+R++ ++  + SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 398 P*SSATV*TAP 430
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 327  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 327  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 327  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 318 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 440
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = -3

Query: 765 RIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEVI 586
           R+   L+    SW+     P EI     L  + ++L+D  + Q+       ++ ++ +  
Sbjct: 513 RVNTKLIDRIASWVKDGVDPVEIDN--RLGQSKDNLIDPETYQLAR---KRYAELVKDFK 567

Query: 585 GIRCPLSLANPRLYTNSRTLFKL 517
           G RC L   NP  Y NS   F+L
Sbjct: 568 G-RCTLIDFNPEFYNNSTGTFRL 589


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,750
Number of Sequences: 27780
Number of extensions: 372137
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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