Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00067
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 71 1e-12
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.8
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.8
AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 5.1
Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical pr... 28 6.7
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 70.9 bits (166), Expect = 1e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+ED
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +1
Query: 649 LIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
L HEI TVG FK A+NFLWPFKLNNPTGGW KKT H+ G
Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEG 226
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +3
Query: 399 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AW P
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYP 141
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/50 (54%), Positives = 39/50 (78%)
Frame = +1
Query: 256 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 405
V+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK K
Sbjct: 54 VQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 107 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 253
+KK+P VPE+VLK Q + + +KK + FKRAE+
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEK 52
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +2
Query: 218 KKKREIFKRAEQSSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 397
KK+R++ ++ + SR ASR +K K A +T P +PN + S S S ++ +
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80
Query: 398 P*SSATV*TAP 430
S + + P
Sbjct: 81 RSSQVKIRSVP 91
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 327 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 327 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 327 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 461
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical
protein F36F12.1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 318 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 440
+Q++R G Q+GI PW P F++V R L+ R ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250
>Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical
protein E03H4.7 protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -3
Query: 765 RIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEVI 586
R+ L+ SW+ P EI L + ++L+D + Q+ ++ ++ +
Sbjct: 513 RVNTKLIDRIASWVKDGVDPVEIDN--RLGQSKDNLIDPETYQLAR---KRYAELVKDFK 567
Query: 585 GIRCPLSLANPRLYTNSRTLFKL 517
G RC L NP Y NS F+L
Sbjct: 568 G-RCTLIDFNPEFYNNSTGTFRL 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,750
Number of Sequences: 27780
Number of extensions: 372137
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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