Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00067
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 94 8e-20
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 94 8e-20
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 94 8e-20
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 92 3e-19
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 91 1e-18
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 91 1e-18
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 57 2e-08
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 30 2.0
At5g59510.1 68418.m07458 expressed protein 29 4.7
At1g15740.1 68414.m01888 leucine-rich repeat family protein 29 4.7
At2g27480.1 68415.m03321 calcium-binding EF hand family protein ... 28 8.2
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 94.3 bits (224), Expect = 8e-20
Identities = 67/174 (38%), Positives = 90/174 (51%), Gaps = 3/174 (1%)
Frame = +1
Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 435
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L +
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIF 114
Query: 436 TMVCLYV*IRLL*IC-YVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
V L V + + V P +T G P LK + + + T +
Sbjct: 115 NGVFLKVNKATINMLRRVEPYVT-YGYPNLKSVKELIYKRGFGKLNHQR-TALTDNSIVD 172
Query: 613 EAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
+ +C LIHEI TVG FK A+NFLWPF+L P GG +KK HY G
Sbjct: 173 QGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEG 226
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVED
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 94.3 bits (224), Expect = 8e-20
Identities = 67/174 (38%), Positives = 90/174 (51%), Gaps = 3/174 (1%)
Frame = +1
Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 435
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L +
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIF 114
Query: 436 TMVCLYV*IRLL*IC-YVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
V L V + + V P +T G P LK + + + T +
Sbjct: 115 NGVFLKVNKATINMLRRVEPYVT-YGYPNLKSVKELIYKRGFGKLNHQR-TALTDNSIVD 172
Query: 613 EAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
+ +C LIHEI TVG FK A+NFLWPF+L P GG +KK HY G
Sbjct: 173 QGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEG 226
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVED
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 94.3 bits (224), Expect = 8e-20
Identities = 67/174 (38%), Positives = 90/174 (51%), Gaps = 3/174 (1%)
Frame = +1
Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 435
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L +
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIF 114
Query: 436 TMVCLYV*IRLL*IC-YVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
V L V + + V P +T G P LK + + + T +
Sbjct: 115 NGVFLKVNKATINMLRRVEPYVT-YGYPNLKSVKELIYKRGFGKLNHQR-TALTDNSIVD 172
Query: 613 EAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
+ +C LIHEI TVG FK A+NFLWPF+L P GG +KK HY G
Sbjct: 173 QGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEG 226
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVED
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 92.3 bits (219), Expect = 3e-19
Identities = 67/174 (38%), Positives = 88/174 (50%), Gaps = 3/174 (1%)
Frame = +1
Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 435
KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L +
Sbjct: 53 KEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIF 112
Query: 436 TMVCLYV*IRLL*IC-YVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
V L V + + V P +T G P LK + + + E
Sbjct: 113 NGVFLKVNKATMNMLRRVEPYVT-YGFPNLKSVKELIYKRGYGKLNHQRIA-LTDNSIVE 170
Query: 613 EAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
+A +C LIHEI TVG FK A+NFLWPF+L P GG +KK HY G
Sbjct: 171 QALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEG 224
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC ED
Sbjct: 137 GFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTED 183
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFP 139
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 125 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQSSRNTASR 277
VPESVLK Q + + ++ IFKRAEQ S+ A +
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEK 58
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 90.6 bits (215), Expect = 1e-18
Identities = 66/174 (37%), Positives = 88/174 (50%), Gaps = 3/174 (1%)
Frame = +1
Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 435
KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L +
Sbjct: 58 KEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIF 117
Query: 436 TMVCLYV*IRLL*IC-YVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
V L V + + V P +T G P LK + + + +
Sbjct: 118 NGVFLKVNKATVNMLRRVEPYVT-YGYPNLKSVKELIYKRGYGKLNHQRIA-LTDNSIVD 175
Query: 613 EAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
+A +C LIHEI TVG FK A+NFLWPF+L P GG +KK HY G
Sbjct: 176 QALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEG 229
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVED
Sbjct: 142 GYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 188
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ + P
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYP 144
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 125 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQSSRNTASRN 280
VPESVLK + + +++ ++ IFKRAEQ ++ A ++
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 64
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 90.6 bits (215), Expect = 1e-18
Identities = 66/174 (37%), Positives = 88/174 (50%), Gaps = 3/174 (1%)
Frame = +1
Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 435
KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L +
Sbjct: 53 KEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIF 112
Query: 436 TMVCLYV*IRLL*IC-YVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
V L V + + V P +T G P LK + + + +
Sbjct: 113 NGVFLKVNKATVNMLRRVEPYVT-YGYPNLKSVKELIYKRGYGKLNHQRIA-LTDNSIVD 170
Query: 613 EAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
+A +C LIHEI TVG FK A+NFLWPF+L P GG +KK HY G
Sbjct: 171 QALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEG 224
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVED
Sbjct: 137 GYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 183
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ + P
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYP 139
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 125 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQSSRNTASRN 280
VPESVLK + + +++ ++ IFKRAEQ ++ A ++
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 59
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ +ED
Sbjct: 141 GYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIED 187
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 256 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 420
V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N L
Sbjct: 56 VHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
Score = 34.7 bits (76), Expect = 0.072
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 649 LIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYSTGET 777
L++EI VG+ F+ FL P KLN P RKK + G+T
Sbjct: 188 LVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDT 232
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 487 SPSLTLLGIPQLKECP*VSIQTW-IRQAEWTTY 582
SPS ++ QL+ C V I TW + EWTT+
Sbjct: 138 SPSCMVISYTQLRSCGSVLIDTWRPGETEWTTH 170
>At5g59510.1 68418.m07458 expressed protein
Length = 144
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 215 IKKKREIFKRAEQSSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 394
+ KK IF+ SS+ +R+ V T +F KP + SSE + F
Sbjct: 9 VVKKDSIFETTHFSSKPVFTRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSA 68
Query: 395 SP*SS 409
P SS
Sbjct: 69 KPTSS 73
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 358 VIRIRGINQVSPKSVKFCNCLDCAK*TMVCLYV*IRLL*ICYVSPSLTLLGIPQLK 525
++ +R + ++ ++K+CNC+ A + + +R L IC +T +GI LK
Sbjct: 229 LVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQIC--CSKITDIGISYLK 282
>At2g27480.1 68415.m03321 calcium-binding EF hand family protein
similar to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 186
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 460 IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQ 600
IRLL Y P +LL + + CP ++ W A+W N + +
Sbjct: 47 IRLLLFIYKIPVDSLLRLGKFTYCPKEYVELWNCLAQWRAIFNRYDR 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,927,255
Number of Sequences: 28952
Number of extensions: 350567
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -