Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00065
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           30   1.9  
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    29   3.4  
05_07_0130 + 27892416-27892737,27893526-27893604,27893689-278938...    29   5.9  
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584...    28   7.8  

>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 86  GFTGARGFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPGAPCVS 220
           G TG +G+     + G+ G +G    +   G +G+P     PCV+
Sbjct: 469 GKTGDQGWSNRHCVAGLTGDQGRSDRLHAAGLTGIPERSDRPCVA 513


>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  GFTGARGFPGPRGLPGIQGMEGEKGEI 166
           G  G  G PG R +PG+ G++ +  E+
Sbjct: 498 GMPGTPGMPGSRKMPGMPGLDNDNWEV 524



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 104 GFPGPRGLPGIQGM-EGEKGEIGMTGQSGLPGAPG 205
           GFP  R  PG  GM  G  G  GM G   +PG PG
Sbjct: 484 GFPMNR--PGTGGMMPGMPGTPGMPGSRKMPGMPG 516


>05_07_0130 +
           27892416-27892737,27893526-27893604,27893689-27893806,
           27894306-27894365
          Length = 192

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 104 GFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPGAPCVSQDFLTG 238
           GFP P   PG  G  G  G      Q   P AP  P  +Q + TG
Sbjct: 63  GFPQPAPPPGFAGASGGGGHYHHHHQQ-QPYAPAEPYYAQGYQTG 106


>03_02_0139 -
           5844107-5844278,5844413-5844521,5844630-5844732,
           5844834-5844865,5845211-5845434,5845774-5845889,
           5845997-5846252,5846720-5846807,5846891-5846962,
           5847096-5847171,5847302-5847360,5848202-5848268,
           5848760-5848825,5850466-5850657
          Length = 543

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 569 NHISRYFTDHTS*NIFGNILSST 501
           NH + Y+T H + NI G +L++T
Sbjct: 374 NHYTTYYTRHNNTNIIGTLLNNT 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,396,357
Number of Sequences: 37544
Number of extensions: 452987
Number of successful extensions: 1033
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)