Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00065
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    34   0.002
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.5  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 95  GARGFPGPRGLPGIQGMEGEKGEIGMTGQSGLPG 196
           G +G    +G+ G+QG++G +G  G+ G  G+PG
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 32.3 bits (70), Expect = 0.006
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 101 RGFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPG 205
           +G  G +   G+QG++G +G  G+ G  G+ G PG
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 29.5 bits (63), Expect = 0.039
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 113 GPRGLPGIQGMEGEKGEIGMTGQSGLPGAPGAPCVSQ 223
           G +G+   QG++G +G  G+ G  G+ G  G P + Q
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLLQ 879


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 74   KGDRGFTGARGFPGPRGLPGIQGMEG 151
            K  + FT   G PGP G+     MEG
Sbjct: 1127 KPQKPFTSPGGIPGPNGIKMPSFMEG 1152


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 540 HILKYIWQYFVLNRHHWYW 484
           H + Y  +   +N HHW+W
Sbjct: 194 HRVAYWREDIGINLHHWHW 212


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 98  ARGFPGPRGLPGIQGMEGEK 157
           AR  PGP G+PG  G    K
Sbjct: 328 ARENPGPPGVPGDHGDHAPK 347


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 98  ARGFPGPRGLPGIQGMEGEK 157
           AR  PGP G+PG  G    K
Sbjct: 328 ARENPGPPGVPGDHGDHAPK 347


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 98  ARGFPGPRGLPGIQGMEGEK 157
           AR  PGP G+PG  G    K
Sbjct: 267 ARENPGPPGVPGDHGDHAPK 286


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 104 GFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGA-PGAP 211
           G PGP+  P       ++G      Q   PG  PGAP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,708
Number of Sequences: 438
Number of extensions: 5712
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)