Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00065
(821 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 38 0.008
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 38 0.008
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 33 0.23
At1g72760.1 68414.m08413 protein kinase family protein contains ... 31 0.92
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 29 3.7
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 29 3.7
At1g47450.1 68414.m05260 expressed protein 29 3.7
At5g28480.1 68418.m03462 hypothetical protein 28 6.5
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 28 6.5
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 28 6.5
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 28 6.5
At1g28320.1 68414.m03475 protease-related similar to Protease de... 28 6.5
At4g31040.1 68417.m04408 proton extrusion protein-related contai... 28 8.6
At1g44222.1 68414.m05107 hypothetical protein 28 8.6
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 110 PGPRGLPGIQGMEGEKGEIGMTGQSGLPG 196
PG +G+PG+QGM+G G GM G G+ G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 34.3 bits (75), Expect = 0.099
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 128 PGIQGMEGEKGEIGMTGQSGLPGAPG 205
PG+QGM G +G GM G G+ G PG
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPG 173
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 80 DRGFTGARGFPGPRGLPGIQGMEGEKGEIGM 172
D G G G G +G+PG+ GM+G G GM
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGM 177
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 71 EKGDRGFTGARGFPGPRGLPGIQGMEGEKG 160
+ G +G G +G G G+PG+QGM G +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 32.3 bits (70), Expect = 0.40
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 77 GDRGFTGARGFPGPRGLPGIQGME 148
G +G G G PG +G+PG+QGM+
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 110 PGPRGLPGIQGMEGEKGEIGMTGQSGLPG 196
PG +G+PG+QGM+G G GM G G+ G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 34.3 bits (75), Expect = 0.099
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 128 PGIQGMEGEKGEIGMTGQSGLPGAPG 205
PG+QGM G +G GM G G+ G PG
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPG 173
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 80 DRGFTGARGFPGPRGLPGIQGMEGEKGEIGM 172
D G G G G +G+PG+ GM+G G GM
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGM 177
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 71 EKGDRGFTGARGFPGPRGLPGIQGMEGEKG 160
+ G +G G +G G G+PG+QGM G +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 32.3 bits (70), Expect = 0.40
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 77 GDRGFTGARGFPGPRGLPGIQGME 148
G +G G G PG +G+PG+QGM+
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 77 GDRGFTGARGFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPGAP 211
G+ G G G PG G+PG G G +PG PG+P
Sbjct: 109 GNPGIPGIPGIPGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGSP 153
>At1g72760.1 68414.m08413 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 697
Score = 31.1 bits (67), Expect = 0.92
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 274 PQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRK-FSTMPFLFCDL---NDVCNY 441
PQC HV+L D + D ++AH L + G C RK + D+ N + NY
Sbjct: 43 PQCVLIHVQLGDTGGHFHQDNPDEAHEFFLPFRGFCARKGIIAKEVILHDIDISNAIVNY 102
Query: 442 ASRN 453
+ N
Sbjct: 103 ITNN 106
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 104 GFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPG---APCVSQ 223
G PG R +PG+ G++ + E+ T PG +P VS+
Sbjct: 501 GMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDGPGPLHSPAVSK 543
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 104 GFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPG---APCVSQ 223
G PG R +PG+ G++ + E+ T PG +P VS+
Sbjct: 505 GMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDGPGPLHSPAVSK 547
>At1g47450.1 68414.m05260 expressed protein
Length = 169
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 262 REVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYA----GSCVRK 390
RE++ + H +L +G+S +Y+ GN A ++D+ Y+ CVR+
Sbjct: 111 REILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYSKQSWNECVRR 156
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 77 GDRGFTGARGFPGPRGLPGIQGMEGEKGEIG 169
G+ G +G G GP G G G G GE+G
Sbjct: 444 GEGGPSGGDGEGGPNGADGEGGPNGADGEVG 474
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 77 GDRGFTGARGFPGPRGLPGIQGMEGEKGEIG 169
G+ G +G G GP G G G G GE+G
Sbjct: 457 GEGGPSGGDGEGGPNGADGEGGPNGADGEVG 487
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 86 GFTGARGFPGPRGLPGIQGMEGEKGEIGMTGQSGLPGAPGAPCVSQD 226
G+ + PG G P G G G PG PGAP + ++
Sbjct: 170 GYPESPDLPGNPGSPDFSGNPGPPSFPRNPGSPEFPGNPGAPIIPRN 216
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 77 GDRGFTGARGFPGPRGLPGIQGMEGEKGEIG 169
G+ G +G G GP G G G G GE+G
Sbjct: 448 GEGGPSGGDGEGGPNGADGEGGPNGADGEVG 478
>At1g28320.1 68414.m03475 protease-related similar to Protease degS
[Precursor] (SP:P44947) [Haemophilus influenzae];
similar to DegP protease precursor (GI:2565436)
[Arabidopsis thaliana]
Length = 709
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 188 LPGAPGAPCVSQD-FLTGILLVRPVKEKSSHNVNPVTSNYGMDILYCT*MATKKPIIK 358
LPG GAP +++ L GIL +RP+++K+S + +G C+ + ++P ++
Sbjct: 277 LPGMEGAPVFAKNGHLIGIL-IRPLRQKNSGVEIQLVVPWGAITTACSHLLLEEPSVE 333
>At4g31040.1 68417.m04408 proton extrusion protein-related contains
weak similarity to Proton extrusion protein pcxA
(Swiss-Prot:P75028) [Synechocystis sp.]
Length = 438
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 109 PGTKRSPRYTGNGR*KRRNWYDRSKWTSRSAWSTMR 216
P +++ +TGN +RR+W+ R + W +R
Sbjct: 54 PSAEKNNSHTGNNNKRRRSWWQRFFFDDDGNWLGLR 89
>At1g44222.1 68414.m05107 hypothetical protein
Length = 85
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 113 GPRGLPGIQGMEGEKGEIGMTGQSGLPGAPG 205
G G PG+ G G G +GM G SG+ G G
Sbjct: 3 GRLGRPGMLGSPGMLGILGMFGISGMVGRLG 33
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,518,246
Number of Sequences: 28952
Number of extensions: 372660
Number of successful extensions: 818
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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