Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00064
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 4.0
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 5.3
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 5.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 7.0
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 26 7.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 7.0
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 25 9.3
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 264 NLRLRFRQLA--LKIHCVLCEIVF*KIPRDFTFYNVVIHFTNTIKA 133
N+R + + L+ K+H V C + +IP F + ++ NT+KA
Sbjct: 836 NVRYQLKDLSDLEKLHQVTCSYISIRIPHKFIPFILIESAINTVKA 881
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 479 NGIQAIPVQSNKQFTIEIVVDETETLWAVDG 571
NG+ AI + N QF +D+ +W+V G
Sbjct: 444 NGVTAIAISPNDQFIAVGSLDQIIRVWSVSG 474
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 64 QQFFNPSNTHLKKSKNFAKKIMKCLNCVSKMDYD 165
++F PSN L +KKIMKC++ + D +
Sbjct: 885 KEFNLPSNQLLAMLVKLSKKIMKCIDEIETKDIE 918
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 171 YNV-VIHFTNTIKAFHYFFCKIFRFLQMCIRGIKKLL 64
YN V+ F +TI H F KI +FL +C+R K+ L
Sbjct: 3 YNANVVKFHSTI--LHKFALKISKFLILCMRRNKRQL 37
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 156 HFTNTIKAFHYFFCKIFRFLQMCIR 82
H T TI+AF Y+F F F C R
Sbjct: 66 HHTFTIEAFFYWFFFFFFFFSHCRR 90
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 270 QTLSEPLTIGSHIICTGTPSEDIPWFAINIGSEELEAGR---SDISVHFNVRQPQCYVVR 440
+T S L G+ + PS+D P F + + E+ S+ S N P V+
Sbjct: 106 ETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVIN 165
Query: 441 NT 446
+T
Sbjct: 166 DT 167
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 409 LKCTEMSERPASNSSLPMFIANHGMSSLGVPVQIICEPIVKGSDKVCVKFTSEI 248
L+ TE+ +P + P + S P+Q +PIV GS + +KF +
Sbjct: 4 LELTEVWGKPQKDIFFPS--GSEVEESTDAPIQRTVQPIVTGSSVLALKFADGV 55
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +2
Query: 380 GSFGHLCAF*CATTTV-LRSEEHTSPREMGS*RNNGIQAIPVQSNKQFTIEIVVDETETL 556
G FGH A T L S +H P + + + + + N + + D+T L
Sbjct: 430 GPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRL 489
Query: 557 WAVDGDHYCSYVHRNPSPFTA 619
W V H + + P TA
Sbjct: 490 WDVHRGHSVRVFNGHTQPVTA 510
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 270 QTLSEPLTIGSHIICTGTPSEDIPWFAINIGSEELEAGR---SDISVHFNVRQPQCYVVR 440
+T S L G+ + PS+D P + + + E+ S+ S N P V+
Sbjct: 106 ETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVIN 165
Query: 441 NT 446
+T
Sbjct: 166 DT 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,731
Number of Sequences: 5004
Number of extensions: 63591
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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