Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00064
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    33   0.26 
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    32   0.45 
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959...    30   1.8  
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144...    28   9.7  

>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
 Frame = +3

Query: 288 LTIGSHIICTGTP----SEDIPWFAINI-GSEELEAGRSDISVHFNVR-----QPQCYVV 437
           L +GSH+   G+P    +  +  FA+ + G  + +   +   +HFN R       +  + 
Sbjct: 154 LGLGSHVTVVGSPRRVAANAVAQFAVEVRGGGDGDGDEAARILHFNPRLRGDWSGRPVIE 213

Query: 438 RNTRRRGKWGP 470
           +NTR RG+WGP
Sbjct: 214 QNTRFRGQWGP 224


>03_02_0445 -
           8551912-8552047,8552729-8552896,8553785-8554068,
           8554143-8555386,8556901-8556967,8557059-8557150,
           8557269-8557480,8558541-8558623,8559092-8559122,
           8559770-8559951,8560557-8560616,8561092-8561289,
           8561485-8561539,8562740-8562855,8563012-8563176,
           8563310-8563483,8564134-8564333,8564778-8564882,
           8565063-8565126,8566452-8566718
          Length = 1300

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 112 FAKKIMKCLNCVSKMDYDVVEGKIPRDLLEYDF 210
           F  ++ KCL+C S +D D V   +PR ++ +DF
Sbjct: 689 FLGRLNKCLSCPSLLDLDAVHSTVPR-IMPWDF 720


>11_06_0060 -
           19695338-19695477,19695641-19695734,19695818-19695973,
           19696109-19696168,19696384-19696602,19696607-19697036,
           19698428-19698747
          Length = 472

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 49  QNVKNQQFFNPSNTHLKKSKNFAKKIMK---CLNCVSKMDYDVVEGKIPRDLLEYDFAED 219
           +N K ++FF  +   L+++ +   + +K   C+ C SK +  +    +  DL      +D
Sbjct: 351 ENTK-EEFFEKTVDVLRQTADICWEKLKGISCITCPSKPEGSMFV-MVKLDLSCLQGIKD 408

Query: 220 AMDFECQLAESQT*ILRKPC 279
            MDF CQLA+ +  IL   C
Sbjct: 409 DMDFCCQLAKEELVILLPGC 428


>05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,
            1447386-1447440
          Length = 1580

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 391  SERPASNSSLPMFIANHGMSSLGVPVQIICEPIVKGSDKVCVKFTSEIP 245
            S    ++S  P F +N+  S L  P+Q   +P+    D + V+F+S +P
Sbjct: 1196 SNMDGASSISPAFTSNYQQSKLADPIQSKPKPLTP-KDLMPVQFSSSLP 1243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684,706
Number of Sequences: 37544
Number of extensions: 399448
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)