Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00063
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    30   0.13 
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    29   0.29 
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   1.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   4.7  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   6.2  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    24   8.2  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   8.2  

>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 ARWRLWRSEHFSLLGGKKGRSPTARSSRRESAKIVAEHSA 313
           A +R+W   H+ +L G KG+  TA  + + S  +  +HSA
Sbjct: 107 APFRVWYETHYGILMGSKGKKATATPTPK-SKHVQRKHSA 145


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 ARWRLWRSEHFSLLGGKKGRSPTARSSRRESAKIVAEHSA 313
           A +R+W   H+ +L G KG+  T+ +   +S  +  +HSA
Sbjct: 107 APFRVWYETHYGILMGSKGKKATS-TPNPKSKHVQRKHSA 145


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 33  RQASFVSFSICTVQSVPSQSLSFFVATNKLPFCDDQEF*FTGQQHIRC--*CYSTRRD 200
           R A ++S S+  ++ +    LS     N  PFC D  +    QQH +C   C  +R+D
Sbjct: 124 RLAVYLSTSLVYIKQL---HLSKPALGNSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 324  YFSAALCSATIFADSRLELRAVGDLPFFPPSKEKCSDRHNRHRA*CYSI 178
            Y+        + + S L+++      FFP ++   S+R  R    C+SI
Sbjct: 1462 YYQMRNTEDMVISRSNLDIQKEAARNFFPSTESPVSNRRQRIAVDCFSI 1510


>SPCC126.07c |||human CTD-binding SR-like protein rA9
          homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 52 RFQSVPCKVFHHNHC 96
          R   +PC  + HNHC
Sbjct: 50 RIAKIPCGHYFHNHC 64


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 310 TMFCYYLRRFAP*APCGGGPSFLST 236
           TM C++L      A C G P  LST
Sbjct: 567 TMVCFWLVEALAMAGCSGYPKLLST 591


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 64  VPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGS 162
           V CK F  N CR+     NC    T  SN Q +
Sbjct: 2   VVCKYFLQNRCRYG---TNCKNQHTVPSNGQNA 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,921
Number of Sequences: 5004
Number of extensions: 30715
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)