Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00063
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0343 - 20437780-20438009,20438576-20438666                       31   0.49 
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166...    29   1.1  
12_02_1179 - 26720533-26721021,26721329-26722597                       28   2.6  
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990...    28   2.6  
07_01_0266 + 1977961-1978120,1979547-1979680,1979813-1979911,198...    28   2.6  
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440...    28   2.6  
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933...    28   3.5  
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029...    27   4.6  
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    27   6.0  
03_05_0348 - 23346182-23348022,23348118-23348148                       27   6.0  
02_01_0382 - 2772378-2773544                                           27   6.0  
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    27   6.0  
11_06_0351 - 22577666-22577989,22578282-22578676,22578961-225793...    27   8.0  
10_01_0058 - 803826-803830,804471-804689,804817-804888,805056-80...    27   8.0  
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    27   8.0  

>05_04_0343 - 20437780-20438009,20438576-20438666
          Length = 106

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 139 KNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPHRTELKARI 285
           K + S+G        + LG  AVV +  FLF +W+++K   R E  AR+
Sbjct: 43  KKAQSKGHTGRTVLIVLLGIGAVVLLSFFLFKYWQKKK---REEQHARL 88


>08_02_0604 -
           19215017-19215101,19215870-19216021,19216591-19216614,
           19216656-19216884,19217061-19217177,19219249-19219311,
           19219887-19220125
          Length = 302

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +1

Query: 178 NAIALGAM---AVVAVGTFLFTWWKERKVPHRT 267
           N I +G++   A+V VG +LF W K R++P ++
Sbjct: 269 NDITIGSLLGTALVIVGLYLFLWAKAREIPKKS 301


>12_02_1179 - 26720533-26721021,26721329-26722597
          Length = 585

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 109 PQINCHFAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPH 261
           P   C     K +  +  N + ++      + VVA+    F WWK+ K P+
Sbjct: 531 PCQECQAVNEKKTGGKKRNANRSHYPVFLFVFVVAIIALFFPWWKDYKEPY 581


>08_02_0070 -
           11897089-11898150,11898389-11898644,11898755-11899059,
           11899149-11899550
          Length = 674

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 299 LLSSPIRALSSVR-WGTFLSFHQVKRN 222
           +LS PI + S+ R WGT+   H  KRN
Sbjct: 604 VLSQPISSSSAERIWGTYQFIHNAKRN 630


>07_01_0266 +
           1977961-1978120,1979547-1979680,1979813-1979911,
           1980257-1980414,1981930-1982018,1982678-1982769,
           1983658-1983706,1983953-1983966
          Length = 264

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 100 NDNDCDGTLCTVQIENETKLACRFT 26
           +DN C G L T    N +K+ C FT
Sbjct: 239 DDNTCQGELVTEYTNNGSKITCGFT 263


>04_04_0111 -
           22842337-22842648,22843008-22843402,22843732-22844073,
           22844154-22844282,22844402-22844514,22844596-22844667,
           22844783-22844859,22844978-22845052,22845058-22845121,
           22845332-22845403,22845496-22845628,22846859-22846961
          Length = 628

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 151 SQG-SNTSA-ANAIALGAMAVVAVGTFLFTWWKERK 252
           SQG S T A A  +A  A  + AV    F WW+ RK
Sbjct: 235 SQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRK 270


>05_06_0051 -
           25190803-25191216,25191301-25191891,25193248-25193317,
           25193392-25193443,25195368-25195440,25195557-25195646
          Length = 429

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 276 LELRAVGDLPFFPPSKEKCSDRH 208
           LELR +  L F+PPSK K   RH
Sbjct: 37  LELRVLQALEFYPPSKLKGIHRH 59


>04_04_0475 +
           25500470-25500609,25500697-25500794,25502806-25502915,
           25502998-25503293,25503399-25503474,25503577-25503688,
           25503955-25504004,25504090-25504392,25504446-25504547,
           25505463-25505635,25505745-25505917,25505997-25506106,
           25506180-25506329,25506726-25506881,25507000-25507116,
           25507277-25507474,25507809-25507952
          Length = 835

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 127 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWW 240
           + + +N  +   +  A   ++   +A+ A G FLF WW
Sbjct: 55  YLLKRNLQATAKSFMAEGKVSADPVAIDAPGGFLFEWW 92


>08_02_0550 + 18509365-18509589,18509668-18510644,18510828-18511802,
            18511885-18512142,18512216-18512326,18512418-18512496,
            18512595-18512687,18512773-18512958
          Length = 967

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 258  GDLPFFPPSKEKCSDR--HNRHRA*CYSISSGC 166
            GDLP FP S  +  D+   N  R  CY I + C
Sbjct: 905  GDLPKFPKSDRELDDKSIQNIQRDLCYFIHNEC 937


>03_05_0348 - 23346182-23348022,23348118-23348148
          Length = 623

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 100 FSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMAVVA 213
           FSL Q   + A+   + ++   T+  +AIALG   VVA
Sbjct: 161 FSLAQPRAYVALNDPAAAEADITALVDAIALGLFCVVA 198


>02_01_0382 - 2772378-2773544
          Length = 388

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 303 SATIFADSRLELRAVGDLPFFPPSKEKCSDRHNR 202
           S+T  + SRL   A G  P  PPS    S RH++
Sbjct: 11  SSTSPSPSRLPRSASGKAPTSPPSSSNASRRHHQ 44


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 127 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWW 240
           + M +N  +      A   ++   +A+ A G FLF WW
Sbjct: 28  YFMKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWW 65


>11_06_0351 -
           22577666-22577989,22578282-22578676,22578961-22579308,
           22579449-22579583,22579664-22579731,22579804-22579869,
           22579970-22580041,22580143-22580286,22580392-22580463,
           22580805-22580872
          Length = 563

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = +1

Query: 64  VPCKVFHHNHCRFSLPQINC--HFAMTK--NSNSQGSNTSAANAIAL--GAMAV-VAVGT 222
           +P ++   +H  +    +NC  H    +  N N+ GSN S    +A   GA+ + V +  
Sbjct: 130 IPKRLLQVSHYSYIGNHLNCGQHLISCEGNNINTGGSNNSKLKVVASIGGAVTLLVIIVL 189

Query: 223 FLFTWWKERKVPHRTEL 273
           FL  WW  +++ HR E+
Sbjct: 190 FLL-WW--QRMRHRPEI 203


>10_01_0058 -
           803826-803830,804471-804689,804817-804888,805056-805245
          Length = 161

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 345 VLFCEQNYFSAALCSATIFADSRLELRAVGDLPFFPPS 232
           VL+C   + SA +C        R  LRA  DLP  P S
Sbjct: 94  VLYCLVFHVSAGMCQWVYSCAYRARLRAAYDLPETPCS 131


>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
            34045969-34046092,34046168-34046294,34046821-34046882,
            34046972-34048023,34048167-34048556,34048667-34052628,
            34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 67   PCKVFHHNHCRFSLPQINCHFAMTKNSN---SQGSNTSAANAI 186
            PCK     +  + LPQ++C      + +   S+ S  S+ANA+
Sbjct: 1569 PCKQLESENGSYCLPQVDCQIEPCYSESVVLSEASTMSSANAM 1611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,373
Number of Sequences: 37544
Number of extensions: 226900
Number of successful extensions: 598
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)