Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00063
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)                 27   8.2  

>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 40  LVLSRFQSVPCKVFHHNHCRF 102
           L   RF S+ C +FH NH  F
Sbjct: 508 LTFERFLSITCPIFHRNHVTF 528


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 97   DNDCDGTLCTVQIENETKLACRF 29
            D+DC+   C V ++ ET L C +
Sbjct: 1905 DSDCEIVWCEVLLDKETNLLCSY 1927


>SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)
          Length = 900

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 97  DNDCDGTLCTVQIENETKLACRF 29
           D+DC+   C V ++ ET L C +
Sbjct: 252 DSDCEIVWCEVLLDKETNLLCSY 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,122,649
Number of Sequences: 59808
Number of extensions: 248022
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)