Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00063
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   9.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 265 CGGGPSFLST 236
           CGGGP+ L+T
Sbjct: 370 CGGGPTILTT 379


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 204  GCGGRNISLYLVERKE 251
            GC  RN+ LY  E++E
Sbjct: 1007 GCRQRNLDLYRQEKEE 1022


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 169 SAANAIALGAMAVVAVGTFLFTWWK 243
           S  N I LG++  +  G FLF  W+
Sbjct: 287 SQINGI-LGSLVAITGGCFLFRAWE 310


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 249 EGPPPHGAQGA 281
           +GPPP G  GA
Sbjct: 44  QGPPPGGPPGA 54


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 197 RWRLWRSEHFSLLGGK 244
           RW L   E   L+GG+
Sbjct: 261 RWNLTSGERVGLVGGR 276


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 209 WRSEHFSLLGG 241
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 67  PCKVFHHNHCRFSLPQINCH 126
           P    HH+H   +L +  CH
Sbjct: 281 PSLASHHSHLSSALGRSACH 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,700
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)