Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00062
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.75 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    29   0.99 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   3.0  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    27   4.0  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   5.3  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   5.3  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   5.3  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   7.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   7.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.3  

>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 669 LCAARRQPGSGVCRDVVSRLVSQGIKNAMSFGTN 770
           +CA   +  S  CR++++R++++G   A+ FG N
Sbjct: 37  ICAMDAKARSKPCRNILNRIIAEGEFEAIVFGDN 70


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -3

Query: 417 VCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVGYLLSLAVALTDERKRSFTL* 238
           V  +P TD PR      +++V++     +V   +D N +G       + TDE +   TL 
Sbjct: 396 VAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIGL---NPKSFTDEEREILTL- 451

Query: 237 LRRKPLTLS 211
            R  P+ LS
Sbjct: 452 FRNPPMRLS 460


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -1

Query: 203 SLFLXPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 36
           SL + P N  GV  LY  +    G Y   V+   D T   L  +    L  R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723

Query: 35  V 33
           +
Sbjct: 724 M 724


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 232 TKASYPVKVSHFSXSPVIDVVYQ-XSTNRYL 143
           T+   PVK  H+  SPV DV Y    TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 325 PQTRRESCWVFAFPCCGPY*RAQTFVHIVAPTKASYPVKVSHFS 194
           P+    + +  A   CG + RA +F+H       +YPV+ +HF+
Sbjct: 540 PKNNTPTNYFLALLMCGEFERAISFLH------TNYPVEATHFA 577


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 542 RTRLHSISPFYQLTLEILNVIRIFRISVGNDESSEALTILATSAAHR--LLIGPVLMVTV 369
           RTR    S FY+ +  +  VI   R S+       AL+I+      +   LI P+ + T+
Sbjct: 258 RTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHLIYQKDFHLISPLHLTTL 317

Query: 368 LTPPS 354
            T PS
Sbjct: 318 RTVPS 322


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -1

Query: 467 ISVGNDESSEALTILATSAAHRLLIGPVLMVTVLTPPSLM*LEVSLSSTDTTGILLGICF 288
           + +  D + E LT +A       + G ++  T +  P  +    S S  + TG L G   
Sbjct: 305 VKIAPDLNEEELTDIADVLKKCKIDGVIVGNTTVQRPKTL---KSTSHVEETGGLSG--- 358

Query: 287 PLLWPLL--TSANVRSHCSSDESLLPCQG 207
           P L P+   T   +R H SSD  ++ C G
Sbjct: 359 PPLKPIALNTLRTLRKHLSSDIPIIGCGG 387


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 423 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 286
           GD+ S PL D P  D  +      +  G++ + +   D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/84 (20%), Positives = 36/84 (42%)
 Frame = +2

Query: 20  SQVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRXLVHHVDYWGXGK 199
           S+V+ P E   +      Y++  +      PI YFG+ H + + +   L+H + ++    
Sbjct: 646 SEVRIPVELAVKELENVIYNSKYEDHGKNLPINYFGLDHFIHLRVWYVLLHKIYFFIASA 705

Query: 200 VTNLDRVRGFRRSYNVNERLRSSV 271
             +L   +     Y + + LR  +
Sbjct: 706 YFSLKNEKFENEFYLLAQDLRRKI 729


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 465 YSENSDDIQNLERELVKRAYTMEPGTNCPQT*RP 566
           +++  +DIQ+ E +L+   YT+ P T      RP
Sbjct: 424 FNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRP 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,693
Number of Sequences: 5004
Number of extensions: 63922
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)