Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00062
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.4
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 29 4.2
03_01_0170 + 1389759-1391159 29 5.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 5.5
06_03_1056 + 27239176-27242361 28 7.3
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524... 28 7.3
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 28 7.3
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 346 NWKCRCRPQTRRESCWVF 293
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/61 (19%), Positives = 28/61 (45%)
Frame = -2
Query: 250 VHIVAPTKASYPVKVSHFSXSPVIDVVYQXSTNRYLHEVVHTEVGYWGVWIQQVLICVVV 71
++ + P S P + H + ++VY+ + NR++ E+ W ++CV+
Sbjct: 943 MYFMGPNTFSEPWHLPHTPPEQISEIVYEDAFNRFVDEINTLAAYQWWEGSIHSILCVLA 1002
Query: 70 W 68
+
Sbjct: 1003 Y 1003
>03_01_0170 + 1389759-1391159
Length = 466
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 296 ICFPLLWPLLTSANVRSHCSSDESLLPCQG*SLFLXPSNRRGVP 165
+ PLL LL SA+ +D LL C + + P RR VP
Sbjct: 5 LAVPLLLCLLASASAARFAPADNHLLACGATAPAVLPDGRRFVP 48
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 223 SYPVKVSHFSXSPVIDVVYQXSTNRYLHEVVHTEVGYWGVWIQQVLI 83
S P F + D++Y STN + + T + W WI +VLI
Sbjct: 1085 SLPFASRAFQAHAIQDLLYLASTNNE-NRIALTSIAEWPEWILEVLI 1130
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 184 VIDVVYQXSTNRYLHEVVHTEVGYW 110
V D + S +R+LH HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838
>04_04_1650 -
35051728-35051823,35052054-35052162,35052270-35052416,
35052516-35052637,35052726-35052825,35052895-35053095,
35053202-35053407,35053778-35053803,35054239-35054327,
35054427-35054635,35055577-35055672,35055754-35055924
Length = 523
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -3
Query: 510 PAHARDFECHQNFQNIRRQRRVFGGVDNPGDVCSAP----LTDRPRADGNSFNAAVSDVT 343
PAH R + + NIRR G + D+ L DRP D N++ A+ +T
Sbjct: 55 PAHKRTYNACRVHDNIRRSLTAAGAIVRHLDLVREAEHVILLDRPNEDLNAYLEAIDKLT 114
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 597 PTQGQSTITCTTWLRAATTSTR*RLCAARRQPGSGVCRDVVSRLVSQG 740
PT ++ + ++AATT+T R A + QP + CR +V+ G
Sbjct: 32 PTPTSASASAAMQMQAATTTTAARRLAPKPQPQANRCRPSSVSVVAAG 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,770,388
Number of Sequences: 37544
Number of extensions: 461999
Number of successful extensions: 1400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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