Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00062
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.20 
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               29   5.6  
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               28   7.4  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      28   7.4  
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      28   9.8  
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = -1

Query: 572  PSGSSSLRAVRTRLHSISPFYQLTLEILNVIRIFRISVGNDESSEALTILA-TSAAHRLL 396
            P     L  V   ++ +S  + + L +L ++ ++R+S    +S+  +  LA T     LL
Sbjct: 763  PGTERKLSHVLAAIYGLSSPFTVALNLLVLVALYRVSSLRSKSNLMIGGLALTDLITGLL 822

Query: 395  IGPVLMVTVLTPPSLM*LEVSLSSTDTTG 309
            I P+++   L+PP       +LS T   G
Sbjct: 823  INPIMIADSLSPPKCGNKLAALSCTVVVG 851


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 326 TTATLPVTSETAALKLLPSARGRSVSGALQTSPGLST 436
           T+   P +++ +A+    S RG+ V+GA+QTS  LST
Sbjct: 874 TSVAAPTSAQYSAVTS-SSPRGQGVAGAIQTSTPLST 909


>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 817

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 393 RPRADGNSFNAAVSDVTGSVAVVHRHDGNPVGYLLSLAVALTDERKRSF 247
           R RA   +FNA  + +T   A   RH G   G+L  +A  ++   + +F
Sbjct: 61  RLRAQSLTFNALKTSITVPTATHTRHTGQRRGFLRDIARRMSGRGQETF 109


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 36  RQRKNGKPPLSQTTTQMRTCC 98
           ++RK   P LSQ+ TQ+ +CC
Sbjct: 787 KRRKTPAPALSQSATQLASCC 807


>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -3

Query: 486 CHQNFQNIRRQRRVFGGVDNPGDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVV-----H 322
           C+      R  RR+F    +PG   S P   RPRA   +F+++ S  +G+   +      
Sbjct: 419 CYDEPGTARHVRRMF----HPGRGVSGPRPPRPRAGAMNFSSSSSSGSGATTSLSSTSSF 474

Query: 321 RHDGNPVGYLLS 286
           R   +P+  LLS
Sbjct: 475 RESMDPIAELLS 486


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 346 YIRDGGVKTVTISTGPISKRCAADVARIVNASEDSSLPTDILKILMTFKISS 501
           Y R G  K    S  P+      D+  ++  + D + P D L +L TF+ +S
Sbjct: 27  YTRVGTRKRPAHSRYPLGHAAIPDMNYLITVTLDRTRPIDFLSVLHTFRPTS 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,788,596
Number of Sequences: 59808
Number of extensions: 525103
Number of successful extensions: 1776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)