Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00062
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -2

Query: 274 PY*RAQTFVHIVAPTKASYPVKVSHFSXSPVIDVVYQXSTNRYLHEVVHTE 122
           PY      +HI + +  S  +K++      ++D +Y  +T   +  + H+E
Sbjct: 167 PYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSE 217


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 245 VNERLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAAL 367
           VN +  +  +  A + +Y  G    LWT A+    SET AL
Sbjct: 275 VNTKQFTQGKFQANDIQYQ-GASDILWTQASAKAISETGAL 314


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 329 TATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKTRR 454
           T TLP  S T      PSA   + +     + G +T P TRR
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP-TRR 265


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 29  KTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRXL 166
           K     K    S+ + +  ED++ P      +  +  ++IPI R L
Sbjct: 146 KNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSL 191


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 703  TPDPGCRRAAHSLHRVDVVAARN 635
            TP P    A H+  RV +V  RN
Sbjct: 1112 TPAPVVLEAVHASRRVLIVLTRN 1134


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 160 STNRYLHEVVHTEVGYWGVWIQQVLICVVVWLRGGFPFFL 41
           S +RY+H       G W      V    VVWL  G   F+
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLISFV 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,243
Number of Sequences: 438
Number of extensions: 4507
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)