BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00062 (782 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)... 33 0.28 At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)... 33 0.28 At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet... 31 0.65 At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 30 2.0 At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ... 29 4.6 At4g32920.1 68417.m04685 glycine-rich protein 28 6.1 At4g11450.1 68417.m01843 expressed protein 28 6.1 At4g06479.1 68417.m00885 hypothetical protein 28 6.1 At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 28 8.0 >At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT) family protein very low similarity to SP|P39909 Spermine/spermidine acetyltransferase (EC 2.3.1.57) {Bacillus subtilis}; contains Pfam profile PF00583: acetyltransferase, GNAT family Length = 270 Score = 32.7 bits (71), Expect = 0.28 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -3 Query: 525 YKPFLPAHARDFE-CHQNFQNIRRQRRVFGGVDNPGDVCSAPLTDRPRADGNS 370 ++P P+ E H++ IR + F V N GD+ S DR R DG+S Sbjct: 27 FRPINPSDLERLEQIHRDIFPIRYESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79 >At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT) family protein very low similarity to SP|P39909 Spermine/spermidine acetyltransferase (EC 2.3.1.57) {Bacillus subtilis}; contains Pfam profile PF00583: acetyltransferase, GNAT family Length = 236 Score = 32.7 bits (71), Expect = 0.28 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -3 Query: 525 YKPFLPAHARDFE-CHQNFQNIRRQRRVFGGVDNPGDVCSAPLTDRPRADGNS 370 ++P P+ E H++ IR + F V N GD+ S DR R DG+S Sbjct: 27 FRPINPSDLERLEQIHRDIFPIRYESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79 >At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related contains weak similarity to Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplast precursor (BCCP) (Swiss-Prot:Q42533) [Arabidopsis thaliana] Length = 263 Score = 31.5 bits (68), Expect = 0.65 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = -3 Query: 354 SDVTGSVAVVHRHDGNPVGY 295 SDVTG V + R DG PVGY Sbjct: 226 SDVTGEVVKILREDGEPVGY 245 >At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing protein similar to SP|Q06881 Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.}; contains Pfam profile PF00364: Biotin-requiring enzyme Length = 274 Score = 29.9 bits (64), Expect = 2.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 354 SDVTGSVAVVHRHDGNPVGYLLSLAVAL 271 SDV+G + + R DG PVGY +L L Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264 >At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to embryonic flower 1 [Arabidopsis thaliana] GI:15430697 Length = 1096 Score = 28.7 bits (61), Expect = 4.6 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -2 Query: 781 LVPQFVPNDMAFLMPCETSRETTSRQTPDPGCRRA-AHSL 665 +V +FVP+ +PCETS+E DP R AHSL Sbjct: 355 VVDEFVPS-----LPCETSQEGIKEHDADPSKRSTPAHSL 389 >At4g32920.1 68417.m04685 glycine-rich protein Length = 1432 Score = 28.3 bits (60), Expect = 6.1 Identities = 13/61 (21%), Positives = 29/61 (47%) Frame = -2 Query: 250 VHIVAPTKASYPVKVSHFSXSPVIDVVYQXSTNRYLHEVVHTEVGYWGVWIQQVLICVVV 71 ++ + P S P +SH + ++VY+ + N ++ EV W +++ V+V Sbjct: 948 IYFLGPNTFSEPWHLSHTPPEEIKEIVYEAAFNGFVDEVNVIAAYQWWEGAIYIMLSVLV 1007 Query: 70 W 68 + Sbjct: 1008 Y 1008 >At4g11450.1 68417.m01843 expressed protein Length = 694 Score = 28.3 bits (60), Expect = 6.1 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = -1 Query: 275 PLLTSANVRSHCSSDESLLPCQG*SLFLXPSNRRGVPALYQSVSSRG 135 PL+ N R CS D+ L+ Q + +PALY S G Sbjct: 554 PLMVLGNPRISCSHDQPLVENQHPLQLFVQGAKEHIPALYMSFVEEG 600 >At4g06479.1 68417.m00885 hypothetical protein Length = 370 Score = 28.3 bits (60), Expect = 6.1 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 23 QVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMY 133 ++ TP++ E S D H E+ LYP IPY Y Sbjct: 289 KLATPAKRPCEICSHTD-HPTEECLYPPQTIPYTDDY 324 >At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha [Drosophila melanogaster] Length = 926 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 540 TNCPQT*RPRRNSAQKWSLPTQGQSTITCTT 632 TNCP RNS + P +ST++C T Sbjct: 778 TNCPSRVPASRNSRPTATNPRNDESTVSCNT 808 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,961,713 Number of Sequences: 28952 Number of extensions: 353758 Number of successful extensions: 1072 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1072 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1755792000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -