Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00061
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.42 
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.3  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   1.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.9  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   3.9  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   6.9  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.9  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   9.1  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   9.1  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 267 VLFTVPLIHVFCQYEMQVRSNRRPASNLHQSPEILLVHRPALTHPNL-LRLTL 112
           VL  +PL+ + C     +    R AS+LHQ    +L     LT P+L LRL L
Sbjct: 382 VLLNIPLVTITC-LTSALAEYARDASDLHQLQNSILRVNSTLTSPSLDLRLEL 433



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 216 VRSNRRPASNLHQSPEILLVHRPALTHPNLLRLTLKIYVFSFSL 85
           +R   R   ++  S   L +HRP+ + P LLR+  K  +++ SL
Sbjct: 47  LRHTFRNGDSVFISYVALRLHRPSTSKPYLLRIVTKGLIYTPSL 90


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 536 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 652
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +1

Query: 484 MGWRYCNIKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITE 663
           MG +  + +L EL++WK   K +     P+ESN  +  +          ++ DN  P +E
Sbjct: 227 MGAKPVDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSE 286

Query: 664 ILDRNPRTDS 693
           +  +  R ++
Sbjct: 287 LFRKRSRDNN 296


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = -1

Query: 706 HIFPWSLCVDCDPVFRLWGNNCHGCQHSTQNTHMYICVKLFH 581
           H +PW L    D   R+W      C         Y+    FH
Sbjct: 105 HEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFH 146


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 598 KCTCVYSGWNVDNRDNYYPITEILDRNPRTDSKEICV 708
           KCT  +   N   RD+Y    EI  R  RT  + IC+
Sbjct: 234 KCTLQHPPGNEIYRDDYISFFEIDGRKQRTWCRNICL 270


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 193 RRTPIRTNLHLVLAENVYQRHGEQHQK 273
           RR PI+TN H + ++ ++++ G  H K
Sbjct: 199 RRAPIKTNPHDIPSQFIFRKLGLHHGK 225


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 496 YC-NIKLDELNLWKIDGKALLQKF 564
           +C N  LDEL L K DGK +L  F
Sbjct: 128 FCLNDPLDELTLIKFDGKKILSLF 151


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 715 LMLHIFPWS---LCVDCDPVFRLWGNNCHGCQHSTQN 614
           L+LH F W    +CV C+  F+ WG   H  +H TQ+
Sbjct: 394 LLLH-FVWKSALICVLCERKFQSWG---HVVKHITQS 426


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 418 SIERCTKAFPFRKFCLAEIRCKMGWRYCNIKLDELNLWKIDG 543
           SI   +  F +   CLA I+ +  W+  N KL++L    I G
Sbjct: 422 SICGLSTTFIWGSICLAHIQFRRAWKIQNRKLEDLPYRSIFG 463


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 546 FAINFPQVQFIKFDITVSPSHFTSDFSKTKFPE 448
           + ++ PQ Q  +     S S + SD+SKT F E
Sbjct: 14  YRVDQPQRQPSRLSTVASISEYQSDYSKTVFEE 46


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 708 YTYFLGVCAWIAIQYFGYGVII 643
           Y YF GV AW ++ ++G  V++
Sbjct: 111 YGYFDGVPAWRSVHHYGEDVLL 132


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 114 LKIYVFSFSLWVLYEKSTIARQTHANRILLWGSQY 10
           L IYV S   W LY+ + + +       ++W SQ+
Sbjct: 519 LAIYVCSKKTWFLYKDANMEQLISVTCPMIWCSQF 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,973
Number of Sequences: 5004
Number of extensions: 61917
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)