Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00061
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.34 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 560 NLSQWNQMEEFYTNVHVCILGGMLTTVTIIT-P*PKYW 670
           +LS W QM + +  + VC +  +  T+T +T P  ++W
Sbjct: 118 SLSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKEFW 155


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 475 RCKMGWRYCNIKLDELNLW 531
           R K  W+Y  + LD L LW
Sbjct: 501 RVKEDWKYVAMVLDRLFLW 519


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 44 TLIGFYFGEANIR 6
          TLI  YFGEA+I+
Sbjct: 14 TLIFLYFGEADIK 26


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 475 RCKMGWRYCNIKLDELNLW 531
           + K  W+Y  + LD L LW
Sbjct: 506 KVKEDWKYVAMVLDRLFLW 524


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 475 RCKMGWRYCNIKLDELNLW 531
           + K  W+Y  + LD L LW
Sbjct: 506 KVKEDWKYVAMVLDRLFLW 524


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 434 PKHFHSGNFVLLKSDVKWDGDTVISN 511
           P  F   N++ +KSD  W  D  + N
Sbjct: 108 PSDFDGINYIYVKSDDIWVPDISVYN 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,603
Number of Sequences: 438
Number of extensions: 4124
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)