Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00060
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   1.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.4  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   3.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   4.1  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    26   7.2  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   9.6  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 540 PRGCCSASTGRRTTWCLSCSTAKWSRTSRTETDRSALRTNSATNITC-ATETGT 698
           P G  S++T  RTT   S  T   +RT+RT T R    TN++   T  +T  GT
Sbjct: 137 PAGNHSSTTANRTT---STPTTTTARTTRT-TPRPTATTNTSNQSTSNSTRNGT 186


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 383 NTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNV 282
           N S +  V E S EAA +RL+ +V  LR S  N+
Sbjct: 668 NISVVCLVRESSDEAAKERLISLVPSLRISSENI 701


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 609 WSRTSRTETDRSA--LRTNSATNITCATETGT 698
           WS T   +  RS   +RTN+ TN TC   + T
Sbjct: 116 WSDTDGVDAGRSTSDIRTNACTNYTCFDYSST 147


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = -3

Query: 419  VIDASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSF---VNVSQ---ASVIVR 258
            +I  S G       S +L   ++ +EA   RL+E+VE+L+N     + V Q   +S+I R
Sbjct: 997  LISFSNGNSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGR 1056

Query: 257  WASDR 243
              S R
Sbjct: 1057 MGSTR 1061


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 437 VDAVFDVIDAS---QGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQASV 267
           V A++   DAS     +  +       T   +SLEAAH+ L  +V   ++  V++   S 
Sbjct: 82  VPAIYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISS 141

Query: 266 IVRW 255
           ++++
Sbjct: 142 VLKY 145


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 326 LVEVVEDLRNSFVNVSQASVIVRWASDRGVLHVTLVS 216
           + E  + L + + +VS   ++++WA  +GV+ +T  S
Sbjct: 207 VAEFTKSLESKY-HVSDTQILLKWAYSKGVIPITTTS 242


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 676 PVRRKLAQDSRREISVRGLGGCRRSLLE 759
           P+ R+  + S  E+    +GGCRR + +
Sbjct: 208 PINREDEESSLAEVGYDDIGGCRRQMAQ 235


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 555 SASTGRRTTWCLSCSTAKWSRTSRTETDRSALRTNSATN 671
           S+ T     W +  S    SRT   ETDRS L   S  N
Sbjct: 261 SSVTHENAAWSIPLSPGD-SRTHSAETDRSLLSAMSVRN 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,660
Number of Sequences: 5004
Number of extensions: 56747
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)