Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00060
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195...    29   5.8  
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    29   5.8  

>04_04_0059 +
           22418795-22418908,22419064-22419202,22419437-22419525,
           22420428-22420690,22420793-22420883,22420966-22421325
          Length = 351

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 97  GGETGVISSTHTYNDIDWHTVTL 165
           GGETG+I    T    DWH + L
Sbjct: 287 GGETGIIKRKRTKEKPDWHLIWL 309


>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -3

Query: 476 LQIVAVCIVRCFEVDAVFDVIDASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDL 303
           +++    +V   E  A FDV   S+ ++     SHLLT     LEA H +++E ++D+
Sbjct: 322 MELELQALVALAEEIANFDVPSGSRKINGKYIQSHLLT----RLEAVHDKVMEQIKDV 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,372,321
Number of Sequences: 37544
Number of extensions: 405184
Number of successful extensions: 1162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)