Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00060
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025) 48 1e-05
SB_55345| Best HMM Match : Laminin_G_2 (HMM E-Value=2e-31) 36 0.029
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 36 0.029
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 36 0.029
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 34 0.16
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053) 31 1.1
SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7) 29 4.4
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 4.4
SB_59769| Best HMM Match : Lectin_C (HMM E-Value=0.42) 29 5.9
SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 5.9
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24) 28 7.7
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 28 7.7
>SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025)
Length = 87
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 608 VVANVENGNGPFRATYKLSNKHYLCDGNWHKIHXXXXXXXXXXXXDGH 751
+V VENGNGPF Y SN LCDG WH+++ DG+
Sbjct: 1 LVFRVENGNGPFEVRYTPSNSMELCDGKWHRVNLNKIRNTASIQVDGN 48
>SB_55345| Best HMM Match : Laminin_G_2 (HMM E-Value=2e-31)
Length = 189
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 VIFYAESAHDKNPVQFLAFFMRDAKLHYMFNCGGETGVISSTHTYNDI-DWHTVTLKRNG 177
+I Y + + +++F M D + F+ G I +H + W+TV L R
Sbjct: 62 IIIYNDQIENGTVGDYISFGMSDGFAEFRFDLGSAGPAIIRSHQQLTLYQWYTVVLTRQE 121
Query: 178 GHGKLAVDSEMV 213
G L VDS+ V
Sbjct: 122 SEGTLQVDSQPV 133
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 VIFYAESAHDKNPVQFLAFFMRDAKLHYMFNCGGETGVISSTHTYNDI-DWHTVTLKRNG 177
+I Y + + +++F M D + F+ G I +H + W+TV L R
Sbjct: 71 IIIYNDQIENGTVGDYISFGMSDGFAEFRFDLGSAGPAIIRSHQQLTLYQWYTVVLTRQE 130
Query: 178 GHGKLAVDSEMV 213
G L VDS+ V
Sbjct: 131 SEGTLQVDSQPV 142
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 34 NPVQFLAFFMRDAKLHYMFNCGGETGVISSTHTYNDIDWHTVTLKRNGGHGKLAVDSE-M 210
N F++ + + + ++ G VI S WHTV +R G L +DSE
Sbjct: 297 NRGDFVSIAIVGGNVEFRYDLGYGRAVIRSKKNITVGQWHTVVAERYRRDGSLILDSEPA 356
Query: 211 VGETSVTCNTPLSLA 255
V + C+ L+LA
Sbjct: 357 VKSQAPCCSVGLNLA 371
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 46 FLAFFMRDAKLHYMFNCGGETGVISSTHTYNDIDWHTVTLKRNGGHGKLAVDS 204
F+A ++D ++ +N G I S DWHTVT R+G G + D+
Sbjct: 828 FIALGLKDGQILLQYNLGSGLARIRSCSLNKTQDWHTVTAGRSGPEGYVYADN 880
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 35.1 bits (77), Expect = 0.068
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 512 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPFR-ATYKLSNKHYLCDG 688
+S+ R +GLLL +G ++ + L+ ++ +++ P + A Y + + LCDG
Sbjct: 1555 LSLSFRTYFKSGLLLFTYGPSSHVAVSLVSGQIKVRLQS---PLKEAVYTSAVANDLCDG 1611
Query: 689 NWHKI 703
WH++
Sbjct: 1612 FWHRV 1616
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 46 FLAFFMRDAKLHYMFNCGGETGVISSTHTYNDIDWHTVTLKRNGGHGKLAVDS 204
FLA +R+ + + F+CG + + S WH V + R+ L VD+
Sbjct: 364 FLALGLRNGHVEFRFSCGADIAQVRSRQNITLNQWHNVVVFRDKRDAHLMVDN 416
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +2
Query: 509 SISMEVRPRNTTGLLL----SVHGKKDYMVLELLDSEVVANVENGNGPFRATYKLSNK 670
+IS+ ++PR+ TGL+L GK D++ L L + V + G+GP KL+ K
Sbjct: 557 TISLVLKPRSDTGLILFNSQKKDGKTDFISLSLREGIVEFIFDCGSGPAVIRIKLNEK 614
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 100 GETGVISSTHTYNDIDWHTVTLKRNGGHGKLAVDSEMVGE 219
GE + + ND WH V +KR G H KL +D G+
Sbjct: 315 GELVLSAGDGLLNDNRWHWVEIKRRGRHAKLVLDGREGGK 354
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 512 ISMEVRPRNTTGLLLSVH--GKKDYMVLELLDSEVVANVENGNGPFRATYKLSNKHYLCD 685
+S R + +G+L++ D++ + LL+ +V ++GN P + S Y D
Sbjct: 464 LSFSFRAKEPSGVLITQEHDSNDDFLTIGLLNGKVRFRCDSGNSPL--DLETSGVQYN-D 520
Query: 686 GNWHKIH 706
G WH +H
Sbjct: 521 GKWHHVH 527
Score = 31.9 bits (69), Expect = 0.63
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 25 HDKNPVQFLAFFMRDAKLHYMFNCGGET-GVISSTHTYNDIDWHTVTLKRNGGHGKLAVD 201
HD N FL + + K+ + + G + +S YND WH V L +NG +VD
Sbjct: 482 HDSND-DFLTIGLLNGKVRFRCDSGNSPLDLETSGVQYNDGKWHHVHLDKNGLDITFSVD 540
Query: 202 SEM 210
E+
Sbjct: 541 QEV 543
>SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)
Length = 377
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 339 CLKGLLMNGQQVTRIGNAVNALRCVDNIED 428
CL+ L++NG Q+T++ + V+ LR + + D
Sbjct: 189 CLEVLMLNGNQLTKLTDVVHELRAMQRLHD 218
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 724 VQRFHDVNLVPVSVAQVMFVAEFVRSAERSVSVLDVRDHFAVEQLK 587
+QR HD+NL +AQ +V +S+ +LD R+ E++K
Sbjct: 213 MQRLHDLNLFNNPLAQDYDYRSYVIHRIKSLKILDRREVLQAERIK 258
>SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)
Length = 543
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 534 VTPRGCCSASTGRRTTWCLSCSTAKWSR----TSRTETDRSALRT 656
+TP G S STG RTT S + SR T+ E D A++T
Sbjct: 130 ITPTGASSTSTGARTTSAGSIAPTSGSRPTGMTTSMEEDPEAIQT 174
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +1
Query: 76 LHYMFNCGGETGVISSTHTYNDIDWHTVTLKRNGGHGKLAVDSEMVGETSVTCNTPLSLA 255
L + +N G ++ S ++ N W+T+ R+G +G+L ++ V+ ++P SL+
Sbjct: 1948 LFHSYNLGNGPLLLESLNSINLRQWNTLRAMRSGRYGRLVLNG-----VEVSGSSPPSLS 2002
Query: 256 HLTI 267
L +
Sbjct: 2003 KLNV 2006
>SB_59769| Best HMM Match : Lectin_C (HMM E-Value=0.42)
Length = 218
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 389 VANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQASVIVRW 255
+ N L +H++S + KRL +V+ N + V QA++ + W
Sbjct: 145 IMNPPLLANIHKQSTQLCPKRLRDVLRHSPNMLIAVLQATINLCW 189
>SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 679 VRRKLAQDSRREISVRGLGGCRRSLLEAGIGAY 777
+ +KLA+ S E+ RG CR+ LE G+ A+
Sbjct: 123 IGKKLAKQSSEEVIRRGHRECRQPRLEGGVVAF 155
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -3
Query: 434 DAVFDVIDASQGV--HSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQASVIV 261
DA+ + + +++ V + N L + +LEAA ++ + E+L+NS NV++ V +
Sbjct: 1120 DAIIERLRSAKAVTDEELLNLKRELMNTKNALEAAQNKIRSLEENLKNSQTNVNKLEVTI 1179
>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
Length = 347
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 431 AVFDVIDASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLR 300
A D+ + + S+AN+ L HEK LE K ++EV+ ++
Sbjct: 106 ATVDLESIYKRIRSMANSQKRLESHEKVLEEHLKEMLEVIAHMQ 149
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 676 PVRRKLAQDSRREISVRGLGGCRRSLLE 759
PV+R+ ++S E+ +GGCR+ L +
Sbjct: 142 PVKREEEEESLNEVGYDDIGGCRKQLAQ 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,229,651
Number of Sequences: 59808
Number of extensions: 451763
Number of successful extensions: 1421
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -