Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00060
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.47 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   1.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 25/92 (27%), Positives = 39/92 (42%)
 Frame = -3

Query: 410 ASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQASVIVRWASDRGVLH 231
           AS GV S         V EK+   +   L+ V+      F NV     +VR  + + V +
Sbjct: 163 ASSGVVSAGECGPAADVDEKTDANSWWALILVIVPCLTLFGNVLVILAVVRERALQTVTN 222

Query: 230 VTLVSPTISESTASLP*PPFRFRVTVCQSMSL 135
             +VS  +++   ++   PF   V V  S SL
Sbjct: 223 YFIVSLAVADLLVAVLVMPFAVYVLVNGSWSL 254


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 209 ISESTASLP*PPFRFRVTVCQSMSL*VCVEDITPVSPPQLNM*WSLASLMKNAKNCT 39
           I  +   LP PP+R    +   MSL    E   P   P  ++ W++  L     NCT
Sbjct: 483 IENTIQGLP-PPYRLNKPL---MSLITSSEVRQPGKAPNYSVNWTIGQLEAEVINCT 535


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 501 DEVLYQWRYVPVTPRGCCSASTGRRTT 581
           DE++  W  V +T   C S   GR  T
Sbjct: 129 DELITGWSAVVITAAICTSGIVGRTHT 155


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 SNNTHSNYLKLLENFKVGDE 506
           +NN ++NY KL +N+ +  E
Sbjct: 106 NNNYNNNYKKLYKNYIINIE 125


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 SNNTHSNYLKLLENFKVGDE 506
           +NN ++NY KL +N+ +  E
Sbjct: 106 NNNYNNNYKKLYKNYIINIE 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,620
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)