Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00060
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51920.1 68414.m05853 expressed protein                             32   0.52 
At1g11810.1 68414.m01357 F-box family protein contains Pfam PF00...    31   1.2  
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa...    29   3.6  
At1g64150.1 68414.m07267 expressed protein contains Pfam profile...    29   3.6  
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...    29   4.8  
At3g32980.1 68416.m04183 peroxidase 32 (PER32) (P32) (PRXR3) ide...    28   6.3  

>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 217 PR-PFQSRRPVYRDLRSVSESPCASLCRCKCASRILRPSHLRS 92
           PR P  SRRP+         +P  S CRC CAS I+  +H  S
Sbjct: 34  PRAPISSRRPICPACVCCEPAPLGSCCRC-CASPIVTQTHHHS 75


>At1g11810.1 68414.m01357 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; EST gb|AA605362 comes
           from this gene
          Length = 377

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 426 DGVYFEASNNTHSNYLKLLENFKVGDEVLYQWRYVPVTPRGCCSASTG 569
           DG+ F  SNN +SNY  ++ N  +G+  L Q R +  + +  CS + G
Sbjct: 101 DGLLFCISNNHYSNYTLMVCNMYLGETRLIQNRSLFESYQNFCSYAFG 148


>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
           family protein / ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain, Pfam profile
           PF00454:  Phosphatidylinositol 3- and 4-kinase
          Length = 574

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 509 SISMEVRPRN--TTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPFRATYKLSNKHYLC 682
           +IS E +P+       +++   K   ++ EL+ S  +  +E GNGP R++      +++ 
Sbjct: 216 NISSEAKPKEFFVEPFIVNPEIKLPILLKELISS-TLEGLEKGNGPIRSSDGSGGAYFMQ 274

Query: 683 DGNWHK 700
           D + HK
Sbjct: 275 DPSGHK 280


>At1g64150.1 68414.m07267 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 370

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 211 PFQSRRPVYRDLRSVSESPCASLCRCKCA 125
           PFQ+ RP   D  S S SP +S  RC  A
Sbjct: 13  PFQNPRPPKSDFSSTSSSPSSSSRRCVSA 41


>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
           reticulum-type (ACA6) (ECA3) nearly identical to
           SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 998

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 579 TWCLSCSTAKWSRTSRTETDRSALRTNSATNITCATETGTRFTS 710
           T CL+  T K +R +       ++ T   T + C+ +TGT  T+
Sbjct: 312 TTCLALGTKKMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTN 355


>At3g32980.1 68416.m04183 peroxidase 32 (PER32) (P32) (PRXR3)
           identical to SP|Q9LHB9 Peroxidase 32 precursor (EC
           1.11.1.7) (Atperox P32) (PRXR3) (ATP16a) {Arabidopsis
           thaliana}
          Length = 352

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 294 RISKIFDNFYQPFMGCLKGLLMNGQQVTRIGNAVNALRCVDNIEDG 431
           R   +FDN Y   +  LKGL+   Q++    NA + +  V    DG
Sbjct: 253 RTPTVFDNKYYVNLKELKGLIQTDQELFSSPNATDTIPLVREYADG 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,181
Number of Sequences: 28952
Number of extensions: 309547
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)