Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00058
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 60 1e-09
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.32
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.3
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 6.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 6.9
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 6.9
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 9.2
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 28 9.2
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +1
Query: 283 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 462
DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG+ K+LQFF GESM D
Sbjct: 83 DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDD 139
Query: 463 GMVAMMEYRD 492
G + Y+D
Sbjct: 140 GGLVFAYYKD 149
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +2
Query: 41 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 211
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 212 TDSAVESGVDIV 247
D VDIV
Sbjct: 60 VDDQAVKVVDIV 71
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 483 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 349
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 280 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 453
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 454 D 456
+
Sbjct: 1195 E 1195
>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 319 YSL*GTMCRISCHRRRMFRLAWVQDYVNSALDGRVRALVSLFSRRIKTLDLDI-TLCSRH 143
YSL G+ SCH +R RL V + + + ++ IK L+ TL +RH
Sbjct: 1200 YSLPGSSVAKSCHLKRPMRLIDVLENFRKCFGTFAQEFQRMVNKWIKASVLEARTLFNRH 1259
Query: 142 QPT-GHFVN 119
Q T F+N
Sbjct: 1260 QLTVTKFIN 1268
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 146 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNP 256
TR+ +Q++GF PSA ++ +G+ + V S + + P
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVP 863
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 355 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 257
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 508 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 422
F YH +Y+ SW C H N ++ Q + +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 77 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIV 247
+FS VDE I +E+ + G+I ++GF G D+AVE ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,909,955
Number of Sequences: 37544
Number of extensions: 339656
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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