Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00057
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 68 7e-13
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 67 1e-12
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 3.0
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 4.0
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 5.2
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 24 9.1
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 24 9.1
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 24 9.1
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 24 9.1
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 67.7 bits (158), Expect = 7e-13
Identities = 35/70 (50%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 47 KLCNHSSPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 226
K C KT++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R G
Sbjct: 44 KACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPRAG 103
Query: 227 -PVGRPDAPA 253
P R A A
Sbjct: 104 RPEPRERASA 113
Score = 41.5 bits (93), Expect = 6e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 1 PKHTELEKIPNLQVIKAMQSLKSRGYVK 84
PKH E+ +PNLQVIKA QSL SRGY+K
Sbjct: 30 PKHPEVG-VPNLQVIKACQSLDSRGYLK 56
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 67.3 bits (157), Expect = 1e-12
Identities = 31/60 (51%), Positives = 37/60 (61%)
Frame = +2
Query: 47 KLCNHSSPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 226
K C KT++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R G
Sbjct: 44 KACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPRAG 103
Score = 41.5 bits (93), Expect = 6e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 1 PKHTELEKIPNLQVIKAMQSLKSRGYVK 84
PKH E+ +PNLQVIKA QSL SRGY+K
Sbjct: 30 PKHPEVG-VPNLQVIKACQSLDSRGYLK 56
Score = 24.2 bits (50), Expect = 9.1
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 280 RRTPAAPGVAPHDKKAD-VGPGSADLEFKGGYGR 378
R + A G +KK D PG F+GG+GR
Sbjct: 110 RSSAADAGYRRAEKKDDGAAPGGFAPSFRGGFGR 143
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 3.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 59 HSSPEVMSKTQFAWRHFYWY 118
H+ E++ + + AW++FY Y
Sbjct: 291 HAPREILKQFEIAWKYFYQY 310
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 1 PKHTELEKIPNLQVIKAMQSLKSRGYVKDTVCLEALLLVPNQ*GY*ILE 147
P + L P+LQ IK + ++ Y+ CL L P + + ILE
Sbjct: 225 PSNLALAVHPDLQYIKILDKDSNKKYILMESCLGILYKNPKKANFEILE 273
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 5.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 195 RLSVAGTISGGRCKNILKY 139
R+ G+++GG CK LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 33 PPSYQSYAITQVQRLCQRHSL 95
P QSYA Q+ R C R S+
Sbjct: 203 PEGIQSYAFFQLLRSCNRQSM 223
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 134 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 238
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 24.2 bits (50), Expect = 9.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 346 LSLDQHQPFYHEVQHQGQQEY 284
L ++QH ++HE Q++ + EY
Sbjct: 164 LDIEQHLQYFHEWQNKPRVEY 184
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 165 LLKLCLQHLSAQYVQRQY 218
LLK+CL +SA Y+ Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,538
Number of Sequences: 5004
Number of extensions: 28231
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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