Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00057
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 69 1e-12
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 69 1e-12
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 69 2e-12
08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736... 29 1.7
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 2.2
12_02_0269 - 16617292-16618852,16622763-16623562 28 3.9
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 28 3.9
03_05_0528 - 25268396-25269217 28 3.9
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 3.9
09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356 27 5.1
04_01_0224 - 2830669-2830969,2831049-2831219,2831302-2832134,283... 27 5.1
02_01_0205 - 1379448-1379696,1379827-1379901,1379983-1380056,138... 27 5.1
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 6.8
09_03_0062 - 11969719-11970036,11970115-11970843 27 6.8
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 27 9.0
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 27 9.0
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 69.3 bits (162), Expect = 1e-12
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Frame = +2
Query: 65 SPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG- 235
S E + +T F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G
Sbjct: 51 SKEYVRET-FSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGD 109
Query: 236 RPDAP 250
RP P
Sbjct: 110 RPRGP 114
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 4 KHTELEKIPNLQVIKAMQSLKSRGYVKDT 90
KH +++ +PNLQVIK MQS KS+ YV++T
Sbjct: 31 KHPQID-VPNLQVIKLMQSFKSKEYVRET 58
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 69.3 bits (162), Expect = 1e-12
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Frame = +2
Query: 65 SPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG- 235
S E + +T F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G
Sbjct: 51 SKEYVRET-FSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGD 109
Query: 236 RPDAP 250
RP P
Sbjct: 110 RPRGP 114
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 4 KHTELEKIPNLQVIKAMQSLKSRGYVKDT 90
KH +++ +PNLQVIK MQS KS+ YV++T
Sbjct: 31 KHPQID-VPNLQVIKLMQSFKSKEYVRET 58
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 68.9 bits (161), Expect = 2e-12
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Frame = +2
Query: 65 SPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGPVG- 235
S E + +T F+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + GP G
Sbjct: 51 SKEYVRET-FSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGD 109
Query: 236 RPDAP 250
RP P
Sbjct: 110 RPRGP 114
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 4 KHTELEKIPNLQVIKAMQSLKSRGYVKDT 90
KH +++ +PNL+VIK MQS KS+ YV++T
Sbjct: 31 KHPKVD-VPNLEVIKLMQSFKSKEYVRET 58
>08_02_0737 -
20572068-20572290,20572785-20572841,20573482-20573672,
20574566-20574700,20575722-20575871
Length = 251
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 306 NTRGSRSTSVCRSVLSRGAGASGRPTGP 223
N R +R+ + + RG+G+S RPTGP
Sbjct: 149 NGRPTRTVVMTPEIGQRGSGSSSRPTGP 176
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 280 RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 387
R TP P + PH K+A P S L G G P
Sbjct: 9 RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 29 LTSKLSKLCNHSSPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATL-KRSVR 205
L KL ++C + E+ T+F +++ W+L E + + L P + + KR +R
Sbjct: 13 LLVKLEEVCRYDLKEIQFSTEFDFKNNIWHLKEE-LSCMNALLQKLPNMEALNIQKRELR 71
Query: 206 TE 211
+
Sbjct: 72 NK 73
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 264 LSRGAGASGRPTGPRRTVSVRTERLSVAGTISGGRCKNILKYSIPSLVR 118
L G GAS TG RR + ++ GGR ++L +IPSL R
Sbjct: 40 LDGGGGASADATGRRRGSAAGSKGCGKGP--GGGRSSSLLPVNIPSLPR 86
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 3.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 337 PGSADLEFKGGYGRG 381
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 309 CNTRGSRSTSVCRSVLSRGAGASGRPTG 226
CN SR+ S+C S + A SG P G
Sbjct: 939 CNKELSRTISICNSTSTENAIGSGYPVG 966
>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
Length = 292
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 291 RSTSVCRSVLSRGAGASGRPTGPRRTV 211
+ST ++VL G G GRP G ++T+
Sbjct: 115 KSTGKDKAVLHGGGGGGGRPVGVKKTL 141
>04_01_0224 -
2830669-2830969,2831049-2831219,2831302-2832134,
2832216-2832677,2832756-2833489,2833578-2833707
Length = 876
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 306 NTRGSRSTSVCRSVLS--RGAGASGRPTGPRRTV 211
++R SRS ++ +++ R ASGRPT PR +
Sbjct: 62 SSRNSRSQNIWPTIVQVIREVDASGRPTAPRTVI 95
>02_01_0205 -
1379448-1379696,1379827-1379901,1379983-1380056,
1380150-1380237,1380327-1380475,1380688-1380847,
1380933-1381088,1381177-1381365,1381481-1381714,
1381785-1382009,1382097-1382177
Length = 559
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 273 RSVLSRGAGASGRPTGPRRTVSVRTERLSVAGTISGGRCKNILKYSIPS 127
R +L +G G S P + + T LS+ GT +GG+ + S PS
Sbjct: 480 RRMLGQGTGESPVVRPPPKNIKNVTRTLSMGGTSTGGKKASASVSSRPS 528
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 214 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 122
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 137 QYPHWLGTSKSASRQ 93
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 268 RSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 381
RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 64 RSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 65 SPEVMSKTQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRR 223
SP + + F WR F+ YLT E I YL +HL + +T RS+ + R+
Sbjct: 613 SPGSANSSPF-WRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDESRK 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,752
Number of Sequences: 37544
Number of extensions: 211579
Number of successful extensions: 769
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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