Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00057
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 66 1e-11
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.0
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 27 6.1
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 27 8.1
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 27 8.1
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 27 8.1
U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 27 8.1
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 27 8.1
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/52 (59%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Frame = +2
Query: 83 KTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLK---RSVRTETVRRGP 229
K QFAWRH+YWYLT+ GI YLR +L LP EIVPAT+K R +R R P
Sbjct: 57 KEQFAWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHEDRAP 108
Score = 31.5 bits (68), Expect = 0.28
Identities = 33/127 (25%), Positives = 46/127 (36%)
Frame = +1
Query: 7 HTELEKIPNLQVIKAMQSLKSRGYVKDTVCLEALLLVPNQ*GY*ILENILAPSS*NCACN 186
H +E + NL+VIK ++SL SR VK+ G L LA +
Sbjct: 32 HPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPA-EIVPA 90
Query: 187 T*ALSTYRDSTXXXXXXXXXXXXXAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKG 366
T DR AYR +K + GPG A + ++
Sbjct: 91 TIKTKPREIRVPHEDRAPRAAQGEKGDREAYRT----------EKVTEAGPGGAPV-YRA 139
Query: 367 GYGRGRP 387
G+GRG P
Sbjct: 140 GFGRGAP 146
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 358 IQDQLSLDQHQPFYHEVQHQGQQE 287
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 303 TRGSRSTSVCRSVLSRGAGASGRPTGPRRTVS 208
T G ++T+VCR + + S PT P TV+
Sbjct: 120 TYGDKATAVCRRQQTFASTVSAAPTNPPTTVT 151
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 303 TRGSRSTSVCRSVLSRGAGASGRPTGPRRTVS 208
T G ++T+VCR + + S PT P TV+
Sbjct: 133 TYGDKATAVCRRQQTFASTVSAAPTNPPTTVT 164
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 330 ISLFIM-RCNTRGSRSTSVCRSVLSRGA-GASGRPTGPRRTVSVRTERLSVAGTISGGRC 157
+S +I R N +G + +V V +G G+ P G ++ VS+R R T C
Sbjct: 68 VSYYIQERSNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSC 127
Query: 156 KNI 148
N+
Sbjct: 128 PNV 130
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 330 ISLFIM-RCNTRGSRSTSVCRSVLSRGA-GASGRPTGPRRTVSVRTERLSVAGTISGGRC 157
+S +I R N +G + +V V +G G+ P G ++ VS+R R T C
Sbjct: 99 VSYYIQERSNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSC 158
Query: 156 KNI 148
N+
Sbjct: 159 PNV 161
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 330 ISLFIM-RCNTRGSRSTSVCRSVLSRGA-GASGRPTGPRRTVSVRTERLSVAGTISGGRC 157
+S +I R N +G + +V V +G G+ P G ++ VS+R R T C
Sbjct: 99 VSYYIQERSNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSC 158
Query: 156 KNI 148
N+
Sbjct: 159 PNV 161
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 330 ISLFIM-RCNTRGSRSTSVCRSVLSRGA-GASGRPTGPRRTVSVRTERLSVAGTISGGRC 157
+S +I R N +G + +V V +G G+ P G ++ VS+R R T C
Sbjct: 99 VSYYIQERSNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSC 158
Query: 156 KNI 148
N+
Sbjct: 159 PNV 161
>U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical
protein C41G11.4b protein.
Length = 514
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 74 VMSKTQFAWRHFYWY 118
+ + TQFAW H YW+
Sbjct: 76 IYAPTQFAWIHSYWW 90
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 74 VMSKTQFAWRHFYWY 118
+ + TQFAW H YW+
Sbjct: 76 IYAPTQFAWIHSYWW 90
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 74 VMSKTQFAWRHFYWY 118
+ + TQFAW H YW+
Sbjct: 76 IYAPTQFAWIHSYWW 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,858,090
Number of Sequences: 27780
Number of extensions: 173942
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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