Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00057
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 288 SCCPWCC 308
           SCC WCC
Sbjct: 10  SCCCWCC 16


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -1

Query: 394 MKQACHVHSLP*IQDQLSLDQHQPFYHEVQHQGQQEYVCMQICPQQR 254
           M+Q    H L   Q Q  + QH  +  + Q Q  Q+        Q+R
Sbjct: 74  MQQLLQQHILSPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHASNQER 120


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 316 HEVQHQGQQEYVCMQICPQQRG 251
           H+V H G++ Y C  +C +  G
Sbjct: 250 HQVAHYGEKVYKC-TLCHETFG 270


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 318 IMRCNTRGSRSTSVCRSVLSRGAGASGRPTGPRRTVSVRTERLSVAG 178
           + RCN  G+ S        +RG  + G       T+SV+ +   V G
Sbjct: 361 VKRCNATGAFSWIGSDGWSARGLVSDGNEAEVEGTLSVQPQANPVKG 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,613
Number of Sequences: 438
Number of extensions: 1916
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)