Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00056
         (492 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.     107   8e-24
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...   107   8e-24
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...   107   8e-24
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...   107   8e-24
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...   105   3e-23
D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain pro...    29   2.6  
AY094898-1|AAM11251.1|  696|Drosophila melanogaster RE73081p pro...    29   4.5  
AJ251892-1|CAB64381.1|  785|Drosophila melanogaster LIM-domain p...    29   4.5  
AJ243710-1|CAB57345.3| 1299|Drosophila melanogaster prickle sple...    29   4.5  
AJ243709-1|CAB99211.2| 1029|Drosophila melanogaster prickle pkM ...    29   4.5  
AJ243708-1|CAB57344.3|  963|Drosophila melanogaster prickle pk i...    29   4.5  
AE013599-318|AAF59281.2| 1299|Drosophila melanogaster CG11084-PC...    29   4.5  
AE013599-313|AAF59284.2| 1029|Drosophila melanogaster CG11084-PB...    29   4.5  
AE013599-308|AAM68908.1|  963|Drosophila melanogaster CG11084-PA...    29   4.5  
AE013599-304|AAM68907.1|  785|Drosophila melanogaster CG12833-PB...    29   4.5  
AE013599-303|AAF59292.2|  785|Drosophila melanogaster CG12833-PA...    29   4.5  
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   7.9  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   7.9  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score =  107 bits (257), Expect = 8e-24
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 21  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFK 200
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH +
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 201 QNKNFCPVLNLDKLWTLV 254
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 296 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score =  107 bits (257), Expect = 8e-24
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 21  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFK 200
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH +
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 201 QNKNFCPVLNLDKLWTLV 254
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 296 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score =  107 bits (257), Expect = 8e-24
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 21  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFK 200
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH +
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 201 QNKNFCPVLNLDKLWTLV 254
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 296 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score =  107 bits (257), Expect = 8e-24
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 21  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFK 200
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH +
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 201 QNKNFCPVLNLDKLWTLV 254
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 296 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score =  105 bits (252), Expect = 3e-23
 Identities = 46/78 (58%), Positives = 52/78 (66%)
 Frame = +3

Query: 21  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFK 200
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH +
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 201 QNKNFCPVLNLDKLWTLV 254
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 296 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           K PVI++VK            P +PVIV              + GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKEAGGVCLLSA 149


>D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain
           protein protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 304 RHQYCQSWILQVARQRQTPQTTCHSKSKVLLKIS 405
           RH  C+   + +A  R+TP  TC S+ + +L+ S
Sbjct: 710 RHSQCRWKAIAMAASRRTPSDTCSSRRRSVLRQS 743


>AY094898-1|AAM11251.1|  696|Drosophila melanogaster RE73081p
           protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 161 LRPDQVRLYFSQLPDDKVPYVN 182


>AJ251892-1|CAB64381.1|  785|Drosophila melanogaster LIM-domain
           protein protein.
          Length = 785

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 161 LRPDQVRLYFSQLPDDKVPYVN 182


>AJ243710-1|CAB57345.3| 1299|Drosophila melanogaster prickle sple
           isoform protein.
          Length = 1299

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 541 LRPDQVRLYFSQIPDDKVPYVN 562


>AJ243709-1|CAB99211.2| 1029|Drosophila melanogaster prickle pkM
           isoform protein.
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 271 LRPDQVRLYFSQIPDDKVPYVN 292


>AJ243708-1|CAB57344.3|  963|Drosophila melanogaster prickle pk
           isoform protein.
          Length = 963

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 205 LRPDQVRLYFSQIPDDKVPYVN 226


>AE013599-318|AAF59281.2| 1299|Drosophila melanogaster CG11084-PC,
           isoform C protein.
          Length = 1299

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 541 LRPDQVRLYFSQIPDDKVPYVN 562


>AE013599-313|AAF59284.2| 1029|Drosophila melanogaster CG11084-PB,
           isoform B protein.
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 271 LRPDQVRLYFSQIPDDKVPYVN 292


>AE013599-308|AAM68908.1|  963|Drosophila melanogaster CG11084-PA,
           isoform A protein.
          Length = 963

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 205 LRPDQVRLYFSQIPDDKVPYVN 226


>AE013599-304|AAM68907.1|  785|Drosophila melanogaster CG12833-PB,
           isoform B protein.
          Length = 785

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 161 LRPDQVRLYFSQLPDDKVPYVN 182


>AE013599-303|AAF59292.2|  785|Drosophila melanogaster CG12833-PA,
           isoform A protein.
          Length = 785

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 ISPEQTRLKYASAPDGKVPVIN 313
           + P+Q RL ++  PD KVP +N
Sbjct: 161 LRPDQVRLYFSQLPDDKVPYVN 182


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 GGEHHHRINMDKYHPGYFGKLGMRNFHFKQNKN 212
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 GGEHHHRINMDKYHPGYFGKLGMRNFHFKQNKN 212
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,779,907
Number of Sequences: 53049
Number of extensions: 443258
Number of successful extensions: 1592
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1721789184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)