Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00056
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   108   2e-24
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    38   0.003
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    28   3.2  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    28   3.2  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical...    28   4.2  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation r...    27   9.8  
U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation r...    27   9.8  
AF082011-1|AAD03023.1|  467|Caenorhabditis elegans UDP-N-acetylg...    27   9.8  
AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine r...    27   9.8  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  108 bits (259), Expect = 2e-24
 Identities = 45/82 (54%), Positives = 58/82 (70%)
 Frame = +3

Query: 9   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 188
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 189 FHFKQNKNFCPVLNLDKLWTLV 254
           FH  +N+++CP +N+++LW+LV
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLV 82



 Score = 31.1 bits (67), Expect = 0.45
 Identities = 24/88 (27%), Positives = 33/88 (37%)
 Frame = +2

Query: 188 FPL*TEQEFLSSFELR*ALDISPEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 367
           F L   Q +  +  +     + P++ R K   A  GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 368 PVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           P+IV                GGACVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +3

Query: 180 MRNFHFKQNKNFCPVLNLDKLWTLV 254
           MR FH  +N+++CP +N+++LW+LV
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLV 25



 Score = 31.1 bits (67), Expect = 0.45
 Identities = 24/88 (27%), Positives = 33/88 (37%)
 Frame = +2

Query: 188 FPL*TEQEFLSSFELR*ALDISPEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 367
           F L   Q +  +  +     + P++ R K   A  GK PVI+  K            P+ 
Sbjct: 4   FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 60

Query: 368 PVIVXXXXXXXXXXXXXXDVGGACVLSA 451
           P+IV                GGACVL A
Sbjct: 61  PLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 322 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 426
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 322 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 426
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 115 PALPRPPGCLRCFPIRPCP 59
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 322 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 426
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 322 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 426
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +3

Query: 12  ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGKL 176
           +T  KK+ K  GH                   N GG   H + M+     ++ P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 177 GMRNFHFKQ 203
           G   F+FK+
Sbjct: 187 GKSFFNFKK 195


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 325 SFDNIDDGDLA-IWSRCILQPRLFRTNVQSLSKF 227
           S  N+  G L  IWSRCI QP  F  +  S+S+F
Sbjct: 14  SSGNVQKGKLLNIWSRCIAQPSSFLGS--SISRF 45


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 180 MRNFHFKQNKNFCPVLNLDKLWTLVLNRRG*SMH 281
           +R+FH   N N+C ++   +      NRRG ++H
Sbjct: 140 LRDFHADVNFNYCIIMRTQQNSPFFSNRRGNALH 173


>AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical
           protein R12E2.10 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 268 AEVCICSRWQGPRHQYCQSWILQVARQRQ 354
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 268 AEVCICSRWQGPRHQYCQSWILQVARQRQ 354
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical
           protein F36F2.2 protein.
          Length = 290

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 192 HFKQNKNFCP--VLNLDKLWTLVLNRRG*SMHLLQMARSPSSILSKLD 329
           H+K +K  CP  +++  K     +NR   S   L   R+PS ++ KL+
Sbjct: 34  HWKISKPGCPPKIISCSKATNNDVNREKRSRRKLVKKRTPSEVIEKLE 81


>U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation
           related protein 12,isoform a protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 111 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 13
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation
           related protein 12,isoform b protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 111 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 13
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>AF082011-1|AAD03023.1|  467|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 111 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 13
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine
           receptor, class t protein31 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 298 LAIWSRCILQPRLFRTNVQSLSKFKTGQKFLFCLKWKFLIPSLPKYPGWYLSM 140
           L +W+   L   L  TN      FK+   F+F     FL+  LP   G Y ++
Sbjct: 116 LGLWASSCLVAMLLVTNRLLDFTFKSAANFMFDKNRTFLVLILPTIYGLYFAI 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,010
Number of Sequences: 27780
Number of extensions: 221522
Number of successful extensions: 583
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)