Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00056
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   107   3e-24
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   105   2e-23
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    48   3e-06
At5g58750.1 68418.m07359 wound-responsive protein-related simila...    31   0.56 
At2g16100.1 68415.m01846 hypothetical protein                          29   2.2  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    27   9.1  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  107 bits (258), Expect = 3e-24
 Identities = 49/82 (59%), Positives = 55/82 (67%)
 Frame = +3

Query: 9   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 188
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 189 FHFKQNKNFCPVLNLDKLWTLV 254
           FH  +NK FCP++NLDKLW+LV
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLV 82


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  105 bits (251), Expect = 2e-23
 Identities = 48/82 (58%), Positives = 53/82 (64%)
 Frame = +3

Query: 9   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 188
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 189 FHFKQNKNFCPVLNLDKLWTLV 254
           FH  +NK FCP++NLDKLW+LV
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLV 82


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 9   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 182
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 183 RNFHFKQNKNFCPVLNLDKLWTLVLNR 263
           R FH  +NK +C ++NLDKLW++VL +
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMVLGK 66


>At5g58750.1 68418.m07359 wound-responsive protein-related similar
           to induced upon wounding stress [Arabidopsis thaliana]
           GI:1483218
          Length = 386

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 149 VPSWILWQTWYEKFPL*TEQEFL-SSFELR*ALD-ISPEQTRLKYASAPDGKVPVINIVK 322
           + S + W TW  +FPL T++  + +   L  ALD I P   RLK+ S   G    +++V+
Sbjct: 84  IVSHVFWVTWSGEFPLDTDECCVQNKTMLMNALDAILPNAKRLKHFSLQTGMKHYVSLVE 143


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 122 APSQNQHGQVPSWILWQTW 178
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 125 PSQNQHGQVPSWILWQTWYEKFPL*TE-QEFLSSFELR*ALDISPEQTRLKYASAPDGKV 301
           P   +  Q+  W+LW+ W  +  L    +EF +   LR A D   E+ R++  +   G  
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTK 409

Query: 302 PVIN 313
           P +N
Sbjct: 410 PQVN 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,991,736
Number of Sequences: 28952
Number of extensions: 206525
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)