Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00055
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   114   1e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   114   1e-26
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.9  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   7.9  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   7.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  114 bits (275), Expect = 1e-26
 Identities = 60/150 (40%), Positives = 79/150 (52%)
 Frame = +3

Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
           G   A+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
                      ARGH IE+IPE+PLVV +  +   +     +     +     ++  +  
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSR 187

Query: 603 VFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
                + K    R +QR+GPL++FN+D G+
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDTGI 217



 Score =  101 bits (241), Expect = 1e-22
 Identities = 46/72 (63%), Positives = 56/72 (77%)
 Frame = +1

Query: 40  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 219
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 220 HQTSAESWGTGR 255
           HQTSAESWGTGR
Sbjct: 60  HQTSAESWGTGR 71


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  114 bits (274), Expect = 1e-26
 Identities = 60/150 (40%), Positives = 79/150 (52%)
 Frame = +3

Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
           G   A+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
                      ARGH IE+IPE+PLVV +  +   +     +     +     ++  +  
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSR 187

Query: 603 VFVLVRVKCATVRRIQRKGPLIIFNKDQGL 692
                + K    R +QR+GPL++FN+D G+
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDAGI 217



 Score =  101 bits (243), Expect = 7e-23
 Identities = 47/72 (65%), Positives = 56/72 (77%)
 Frame = +1

Query: 40  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 219
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 220 HQTSAESWGTGR 255
           HQTSAESWGTGR
Sbjct: 60  HQTSAESWGTGR 71



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 24/42 (57%), Positives = 33/42 (78%)
 Frame = +2

Query: 512 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
           VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNR
Sbjct: 158 VQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNR 199


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 101 APCTVSLFSEYTDTKGRATDRLISLL 24
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 39  SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 149
           SI SP+ SVG + +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 462 GHIIEKIPE-LPLVVAEKSRRSTR 530
           G++I  IP  LPL VAEK ++S R
Sbjct: 650 GYVIYDIPRALPLKVAEKIKKSLR 673


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 468 IIEKIPELPLVVAEKSRRSTRPNRLSS 548
           I+EK+P+ P + AE+  +  R  R ++
Sbjct: 98  IVEKVPDAPPIKAERKTKRPRARRAAN 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,654
Number of Sequences: 5004
Number of extensions: 50817
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)