Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00055
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 109 2e-24
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 109 2e-24
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 33 0.28
06_03_1150 + 28022633-28023374,28023501-28023565 33 0.28
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 32 0.50
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.87
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 4.6
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 4.6
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 4.6
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 6.1
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172... 28 6.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.1
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 28 8.1
05_04_0292 + 19893895-19894983 28 8.1
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 8.1
02_03_0279 + 17250347-17252098 28 8.1
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 109 bits (263), Expect = 2e-24
Identities = 62/150 (41%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 72 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASA 131
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVV---AEKSRRSTRPNRLSSS*GASRHGLISLRCT 593
ARGH IE +PELPLV+ AE ++++ ++ GA +
Sbjct: 132 LAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSV 191
Query: 594 SLSVFVLVRVKCATVRRIQRKGPLIIFNKD 683
+ + K R I RKGPLI++ +
Sbjct: 192 GIRP---GKGKMRNRRYINRKGPLIVYGTE 218
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Frame = +1
Query: 52 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 225
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 226 TSAESWGTGR 255
TSAESWGTGR
Sbjct: 66 TSAESWGTGR 75
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 109 bits (263), Expect = 2e-24
Identities = 65/148 (43%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Frame = +3
Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
G AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 71 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASA 130
Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEKSRRSTRPNRLSSS*GASRHGLISLRCTSLS 602
ARGH IE +PE PLVV++ S S S T S
Sbjct: 131 LAATAVPSLVLARGHRIEGVPEFPLVVSD-SIESIEKTAQSIKVLKQIGAYADAEKTKDS 189
Query: 603 VFVLV-RVKCATVRRIQRKGPLIIFNKD 683
V + + K R I RKGPLI++ +
Sbjct: 190 VAIRAGKGKMRNRRYINRKGPLIVYGTE 217
Score = 81.8 bits (193), Expect = 5e-16
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = +1
Query: 43 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 219
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 220 HQTSAESWGTGR 255
HQTSAESWGTGR
Sbjct: 63 HQTSAESWGTGR 74
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 358 SPGGVGTVASTSDSGER-PWRQPLLLPASQRSFRLEDTLLKRFPSFPWL*PKSPGDQQDQ 534
S GG G ++ SG R P+ PL PA + FP+FP+ P SP Q
Sbjct: 86 SSGGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQ 145
Query: 535 TGCHLPEAP 561
P AP
Sbjct: 146 ASPASPAAP 154
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 358 SPGGVGTVASTSDSGER-PWRQPLLLPASQRSFRLEDTLLKRFPSFPWL*PKSPGDQQDQ 534
S GG G ++ SG R P+ PL PA + FP+FP+ P SP Q
Sbjct: 86 SSGGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQ 145
Query: 535 TGCHLPEAP 561
P AP
Sbjct: 146 ASPASPAAP 154
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +3
Query: 15 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 170
ASL N + P+F V L G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 15 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 170
ASL N I +PTF +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 15 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 170
ASL N I +PT +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 336 HHDTCYRRHPDRTYEYHHHGHAEFGRQPSSTP 241
HH + HP ++HHH H + + P+ TP
Sbjct: 62 HHHHHHHHHPPPRVQHHHHHHHQ--QLPAPTP 91
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 473 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 366
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 15 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 170
ASL+ N ++ +PT V L ++ G S V + GAH G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>08_01_0216 -
1717696-1718265,1718856-1720082,1720558-1720627,
1721579-1721602,1722073-1722140
Length = 652
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 230 VLNHGVLDGCRPNSACPWWWY 292
VL +G+ G RP + P WWY
Sbjct: 208 VLWNGISTGARPRHSSPDWWY 228
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 357 SWGRTYVHHDTCYRRHPDRTYEYHH 283
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +3
Query: 240 MGYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFA-----PTKPW 365
+G+W+ + GG +HR G G G C F P KPW
Sbjct: 425 LGFWSPEHGFSKSAGGCSHRGGDG--GGECEPSMRFLGPVIWPGKPW 469
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 148 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLK 56
G D WAP GG LHP H++ S L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 234 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 103
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>02_03_0279 + 17250347-17252098
Length = 583
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 333 HDTCYRRHPDRTYEYHHHGHAEFGRQPSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 154
H + +R H Y+YHHH H +S+ + +V ++ A+ R G+ V +
Sbjct: 363 HGSNHRHHYH--YQYHHHHHHIIASSAASSAATAASVVRIMIREAIARLRDSGYGFVALA 420
Query: 153 DQVR 142
+V+
Sbjct: 421 MRVK 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,695,048
Number of Sequences: 37544
Number of extensions: 447456
Number of successful extensions: 1663
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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