Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00055
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   106   1e-23
AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical...    29   3.2  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   7.3  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  106 bits (255), Expect = 1e-23
 Identities = 50/90 (55%), Positives = 58/90 (64%)
 Frame = +3

Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
           G   AVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH               
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVVAEK 512
                     QARGH+I+++ E+PLVV++K
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDK 156



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 49  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 228
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 229 SAESWGTGR 255
           SAESWGTGR
Sbjct: 62  SAESWGTGR 70



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +2

Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
           S KV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR
Sbjct: 154 SDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNR 198


>AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical
           protein Y73F8A.33 protein.
          Length = 874

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 682 SLLKIMRGPLRWIRRTVAHFTLTSTKTLRLVHLKDIRPCLEAP-QEDDSLFGLVDLLDFS 506
           +LLK++     W+ R +A  +    KT      +++R C +A  Q +D +    +  DF 
Sbjct: 517 ALLKVLYDAFEWVVRKLAKQSGRCLKTASARKAQNLRNCAKAKLQAEDYILSQNEKGDFE 576

Query: 505 ATTRGSSGIFSI 470
              + S  ++++
Sbjct: 577 IEAKASGKVYTV 588


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 506 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 366
           GY  G + N+  N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 339 VHHDTCYRRHPDRTYEYHHHGHAEFGRQPSST 244
           VH    +R   DR +  HHH H      PS+T
Sbjct: 175 VHDPNRHRYGQDRIHHQHHHHHHHTTTTPSTT 206


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 336 HHDTCYRRHPDRTYEYHHHGH 274
           HHD  +++H  + ++ HHHGH
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH 139


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 339 VHHDTCYRRHPDRTYEYHHHGHAEFGRQPSST 244
           VH    +R   DR +  HHH H      PS+T
Sbjct: 175 VHDPNRHRYGQDRIHHQHHHHHHHTTTTPSTT 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,066,919
Number of Sequences: 27780
Number of extensions: 308987
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)