Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00052
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 28 0.48
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.1
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 26 1.9
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 2.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 3.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 3.4
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 25 4.5
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 5.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 5.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 24 7.8
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 28.3 bits (60), Expect = 0.48
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 17 ISLWENNNVIFKILNTEHEMYLKLDVNVDRYGDRKTWGSNDSSEKRHTWYLY 172
ISL +V + L + E+ L L++ ++RYG K W S D S ++ LY
Sbjct: 109 ISLKSEKDVFLQGLLSMDEIELLLEIFIERYG--KRWLSVDYSASQYMELLY 158
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 1.1
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 185 GDQQLFLIENREYRQGLKLDANVAGTGPPCVGE*RDSRRQPR 310
G + LF E +RQ L VA PP +GE R S R+PR
Sbjct: 1296 GSEILFTEELNVFRQKLHEFMPVAPQPPPFIGESR-SNRKPR 1336
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 1.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 61 HRTRDVLETGRERGQIWRQEDL 126
H+ +D +E R+RG W ED+
Sbjct: 121 HKVKDCMERPRKRGARWTGEDI 142
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 2.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 35 NNVIFKILNTEHEMYLKLDVNVDRY 109
N+V+F+ L E++ Y + N DR+
Sbjct: 207 NSVVFQYLKDENKFYFGVSANQDRF 231
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 305 VVGDCPVIPPHKAVPYRPRSRPASGPAGTPYSQ*GTAVGRPP 180
VV + P +P AVP P + P P + +V +PP
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPP 593
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 305 VVGDCPVIPPHKAVPYRPRSRPASGPAGTPYSQ*GTAVGRPPS 177
VV + P +P AVP P + P P +V +PP+
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPA 684
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 3.4
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = -1
Query: 338 PRLDYEAVVLGVVGDCPVIPPHKAVPYRPRSRPAS----GPAGTPYSQ*GTAVGRPPSPG 171
PRL G PV+ +K +P S PA+ P P S RPP+P
Sbjct: 972 PRLATGGSTAAARGPRPVVQ-NKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPA 1030
Query: 170 INTR 159
+ R
Sbjct: 1031 MQAR 1034
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 4.5
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 35 NNVIFKILNTEHEMYLKLDVNVDRYGDRKTWGS--NDSSEKRHTWYLYPVKVGDQQLFLI 208
N V+ L HE+ K+DV +D GD S N Y+ K G +
Sbjct: 188 NTVVDPELKRVHELVEKVDVVIDTVGDPLLMKSALNQLGIGGRLSYISAPKQGSIEFSYD 247
Query: 209 ENREYRQGLKL 241
+ YR+ LK+
Sbjct: 248 MKQIYRKNLKI 258
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 191 GRPPSPGINTRCVSSHWNHSIPRSS 117
G PPSP +T+ SS ++ + P S
Sbjct: 531 GSPPSPSSSTKSASSSYSTTTPAFS 555
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.6 bits (51), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 185 GDQQLFLIENREYRQGLKLDANVAGTGPPCVGE*RDSRRQPR 310
G + L + E +RQ L +A PP +GE S R+PR
Sbjct: 1221 GAEILLVDETNLFRQKLHECVPIAPNPPPIIGE-SKSTRKPR 1261
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 269 AVPYRPRSRPASGPAGTPYSQ*GTAVGRPPSP 174
A+P RPRS+ PY AV P SP
Sbjct: 460 ALPMRPRSQNVDKHRKFPYYNKRNAVTTPSSP 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,972
Number of Sequences: 5004
Number of extensions: 38054
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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