Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00052
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32040.1 68415.m03914 integral membrane transporter family pr...    31   0.39 
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    30   0.51 
At1g12500.1 68414.m01447 phosphate translocator-related low simi...    29   1.6  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    28   2.7  
At4g02720.1 68417.m00368 expressed protein temporary automated f...    27   4.8  
At3g46290.1 68416.m05010 protein kinase, putative similar to rec...    27   4.8  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         27   6.3  
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik...    27   6.3  
At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    26   8.3  
At5g44520.1 68418.m05454 ribose 5-phosphate isomerase-related lo...    26   8.3  

>At2g32040.1 68415.m03914 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 560

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 355 VEGFHCHGWIMKP*YSGLSATVPLFPHTRRS 263
           + G     W++KP Y  +S +VPLF + RRS
Sbjct: 165 ITGLSSLPWLVKPLYGFISDSVPLFGYRRRS 195


>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = +2

Query: 26  WENNNVIFKILNTEHEMYLKLDVNVDRYGDRKTWGSNDSSEKRHTWYLY 172
           WE++  I+K+  ++ + Y++ ++N D   + + W   D  +++ + Y Y
Sbjct: 278 WEDDVDIYKLYYSDVDEYVEYNINDDDINELRVWVLEDVKKQQWSKYAY 326


>At1g12500.1 68414.m01447 phosphate translocator-related low
           similarity to glucose-6-phosphate/phosphate-translocator
           precursor [Zea mays] GI:2997589,
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275,
           SP|P21727|CPTR_PEA Triose phosphate/phosphate
           translocator, chloroplast precursor (CTPT) {Pisum
           sativum}
          Length = 361

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 353 RRVSLPRLDYEAVVLGVVGDCPVIPPHKAV--PYRP 252
           RR+S PR D  A     + D P  PPH +   P +P
Sbjct: 10  RRMSNPRFDAAATAAPTIVDIPGTPPHSSASSPLKP 45


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 290 PVIPPHKAVPYRPRSRPASGPAGTPYSQ*GTAVGRPPSP 174
           PVI P    P  P+S PAS P  +P       V  PP+P
Sbjct: 89  PVISPATPPPQPPQSPPASAPTVSP-----PPVSPPPAP 122


>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = -1

Query: 308 GVVGDCPVIPPHKAVPYRPRSRPASGPAGTPYSQ*GTAVGRPPSPGINTRCVSSHWNHSI 129
           G VG  P+      + Y    RP  G A   Y Q G  + R    G+N   +    +   
Sbjct: 285 GDVGPMPLPKAEGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLNAEEIQKFEDLGY 344

Query: 128 PRSSCRH 108
             S  RH
Sbjct: 345 VMSGSRH 351


>At3g46290.1 68416.m05010 protein kinase, putative similar to
           receptor-like protein kinase [Catharanthus roseus]
           gi|1644291|emb|CAA97692
          Length = 830

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 266 VPYRPRSRPASGPAGT--PYSQ*GTAVGRPPSPGINTRCVSSHWNHSIP 126
           V Y+ R R   G + T  P+S  GT++G   S G     ++++ N+ IP
Sbjct: 426 VLYKKRKRGQDGHSKTWMPFSINGTSMGSKYSNGTTLTSITTNANYRIP 474


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 290 PVIPPHKAVPYRPRSRPA-SG-PAGTPYSQ*GTAVGRP 183
           P +PP    P  P  RPA SG P G P +Q    +G P
Sbjct: 256 PSMPPPATFPGAPHGRPAVSGLPYGPPSAQVAPPLGFP 293


>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
           protein, putative similar to cold-regulated gene SRC2
           [Glycine max] GI:2055230; contains Pfam profile PF00168:
           C2 domain; identical to cDNA  src2-like protein
           GI:3426059
          Length = 324

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -1

Query: 299 GDCPVIPPHKAVPYRPRSRPASGPAGTPYSQ*GTAVGRPPSP 174
           G  P  PP     Y  +  P  GP G P  Q   A G+P  P
Sbjct: 236 GGYPGYPPQGPYGYPQQGYPPQGPYGYPQQQ---AHGKPQKP 274


>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 288 RYSPTQGGPVPA---TFASSFRPCRYSLFSMRNSCWSPTF 178
           RYSP    P+ A   ++ SS+   +Y+L + R+SC SP F
Sbjct: 47  RYSPFD--PIQAKLFSYPSSYGEHKYALPTHRSSCSSPIF 84


>At5g44520.1 68418.m05454 ribose 5-phosphate isomerase-related low
           similarity to SP|P47968 Ribose 5-phosphate isomerase (EC
           5.3.1.6) (Phosphoriboisomerase) {Mus musculus}
          Length = 296

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 176 VKVGDQQLFLIENREYRQGLK 238
           VKV D+ +F+I+  +Y+ GL+
Sbjct: 152 VKVADEAVFMIKEEQYKAGLE 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,718
Number of Sequences: 28952
Number of extensions: 213795
Number of successful extensions: 649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)