Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00051X
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           28   2.2  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   2.9  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   3.8  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   3.8  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   3.8  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    27   5.0  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     27   5.0  
12_02_0315 - 17417161-17417401,17419426-17419616                       26   8.7  
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381...    26   8.7  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     26   8.7  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 164 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 24
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 49  RIARREQKLKEHGASSCISGKRGRRC 126
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 166 GSRARFQLSGNSGRKHSRCCTS 231
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 161 MESTDPQCHILQHRRPRLPL 102
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = +1

Query: 178 RFQLSGNSGRKHSRCCTSILR------EIKWPQHCVTVDCCC 285
           R      +G+K  RCC S  R      E  + + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +1

Query: 55  ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 219
           A++ +   E   S    G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 87  AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 55  ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 168
           A RE  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 44  ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


>12_02_0315 - 17417161-17417401,17419426-17419616
          Length = 143

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 127 CNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 222
           C IW   ++ ++ G+++ F L+G       RC
Sbjct: 16  CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC 47


>04_04_0760 -
           27837170-27837328,27837441-27837504,27837812-27838160,
           27838906-27838960,27839489-27839821
          Length = 319

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 332 SRPVMLASPHGVGLPWQQQSTVTQCCGHLISRSMLVQQRLC 210
           S P +    H   LPWQQQ           SR  ++ QRLC
Sbjct: 75  SNPKIFVEWHFSALPWQQQQQQHNQLNRSCSR--VLAQRLC 113


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 232 CLCSSGCASCRYS 194
           C C +GC  C+YS
Sbjct: 14  CQCGNGCGGCKYS 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,866,208
Number of Sequences: 37544
Number of extensions: 164227
Number of successful extensions: 377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)