Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00051X
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   0.99 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   4.0  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   7.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 5   RTLNFLNQHSSFY 43
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 98  QLEAPCSFNFCSLRAIRRY 42
           + +   SF  C L+A+R Y
Sbjct: 131 ECDVALSFKLCMLKAMRNY 149


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 214 SRCCTSILREIKWPQHCVTVDCCC 285
           S C  + L   K   HC  V C C
Sbjct: 58  SACAANCLSLGKAGGHCEKVGCIC 81


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 226 TSILREIKWPQHCVTVDC 279
           T  +R IK P H    DC
Sbjct: 319 TQYIRHIKSPYHTPEPDC 336


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 14  NFLNQHSSFYTCVS 55
           N   +HS  YTCV+
Sbjct: 678 NLAAEHSGDYTCVA 691


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 163 IGMPGKKNTITYQCC 177


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 163 IGMPGKKNTITYQCC 177


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 163 IGMPGKKNTITYQCC 177


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 163 IGMPGKKNTITYQCC 177


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 163 IGMPGKKNTITYQCC 177


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 163 IGMPGKKNTITYQCC 177


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 231 IGMPGKKNTITYQCC 245


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VGLPWQQQSTVTQCC 255
           +G+P ++ +   QCC
Sbjct: 231 IGMPGKKNTITYQCC 245


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 118 DRVYH*CS*KPHVPLIFVLFER 53
           + +Y+ C  +P++ + FV+  R
Sbjct: 207 NEIYYNCCPEPYIDITFVVIIR 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,128
Number of Sequences: 438
Number of extensions: 1512
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)