Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00050X
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    29   0.68 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   6.3  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 248 LWSVPHSYFLSIAQISFRVNSTR*FTNNMYKLIYLLN*FH 367
           LWSV     L +   S +  S R + +N Y L+++++ FH
Sbjct: 293 LWSVAAHPMLPLFATSSQDKSVRIYNSNTYNLVHVIDGFH 332


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 268 VFSFDSSNKFSCQ*HEVIYQQYVQVNLSIKLIS*CKGNSSNVTHYLHLATPPSSDQ 435
           VF+ +  ++ S    + I    V+VN  I  +     N   V+H+ H   PP SDQ
Sbjct: 48  VFNTEFRDRESGYYEKAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVSDQ 103


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 349 SIKLIS*CKGNSSNVTHYLHLATPPSS 429
           SI L + C+GNSS+ T+  + +TP  S
Sbjct: 112 SIGLWNYCQGNSSDYTNPTYCSTPSPS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,612
Number of Sequences: 5004
Number of extensions: 32775
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)