Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00050X
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 CKGNSSNVTHYLHLATPPSSDQCSA 444
           C G  +++T Y H+A PPS    S+
Sbjct: 500 CSGEVASLTEYHHVA-PPSGHHASS 523


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +2

Query: 227 FKYDNDFLWSVPHSYFL 277
           + ++ +  W + HSYF+
Sbjct: 220 YSWEQNRSWRITHSYFM 236


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 397 HYLHLATPPSSDQCS 441
           HY   ATPP  D+ S
Sbjct: 246 HYERRATPPQPDRTS 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,972
Number of Sequences: 438
Number of extensions: 2158
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)