Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00049
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.84 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 265 SLCFFLVGIN-QSFHWHFSFFAFLLVS 188
           S+C+F++G+N Q F ++ +    +LV+
Sbjct: 511 SVCYFMIGLNSQGFRFYIACGIMILVA 537


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 572 ENDLNIKKWCEDCHNHICISIYANLEC 652
           E D+ +++ C++C    C+S+    EC
Sbjct: 231 EIDMYMRRKCQECRLKKCLSVGMRPEC 257


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 277 INSASLCFFLVGIN-QSFHWHFSFFAFLLVS 188
           +   S+C+F++G+N   F ++ +    +LV+
Sbjct: 507 VTLTSVCYFMIGLNSHGFRFYIACGIMILVA 537


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 667 IQSKSTFKICINTNTYMIVTI 605
           ++  + F I   T TY+IVTI
Sbjct: 348 VKRSTLFGILATTTTYLIVTI 368


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 174 RQKPKETSRNAKKEKCQ*KDWFIPTRKKHR 263
           +QK  E +RN    + Q K WF   R K++
Sbjct: 270 KQKRWELARNLNLTERQVKIWFQNRRMKNK 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,236
Number of Sequences: 336
Number of extensions: 2774
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)