Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00049
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    36   0.008
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   2.8  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   6.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   8.6  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKT 234
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 172 RAKNQKKQVEMQKKKNASEKTGLSLQERNTGML 270
           +AKN+KK+ + QKKK  + K  L  Q  +   L
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKL 127


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 672 NLFSQNQHSRFA*ILIHI*L*QSSHHFLIFRSFSVSTQSAFIT--CSLILKKTC*SIIRL 499
           N FSQN +S    +  H     ++   ++ RSF+    S FIT    L+   T  ++   
Sbjct: 366 NAFSQNYYSHLQMVAKHFSKNYANQSGIVQRSFAECISSTFITKAFKLVSSNTLQAMSHF 425

Query: 498 YLT 490
           Y T
Sbjct: 426 YAT 428


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 572 ENDLNIKKWCEDCHNHICI--SIYANL 646
           EN++ I+++ E CH   C    IY N+
Sbjct: 185 ENEVRIQEFVESCHGQYCTFQQIYNNI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,238
Number of Sequences: 5004
Number of extensions: 44350
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)