Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00049
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)                     38   0.009
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_40663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)
          Length = 476

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +1

Query: 139 RMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQER 255
           R++ GNQR+LARAKNQKKQ   +  ++ + K G +L +R
Sbjct: 214 RVSGGNQRELARAKNQKKQTGKKASEHDANK-GQNLTDR 251


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 148 RGNQRDLARAKNQ-KKQVEMQKKKNASEKTGLSLQERNTGM 267
           R  QRDL   + Q KKQ + Q++K+  ++  L  + R TG+
Sbjct: 318 RQRQRDLVLTEEQRKKQTKSQRRKSLQQRGKLGAEARGTGV 358


>SB_40663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 652 TFKICINTNTYMIVTI---LTPLFDIQIILSFNSVRFHNM*FNTKENLLIH 509
           ++ IC+NTN   + TI        +I +  +  SV  +N  F+T  N+ +H
Sbjct: 12  SYNICVNTNNQGVHTINQGFDTSHNICVNTNNQSVHTNNKGFDTSHNICVH 62


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = -3

Query: 643 ICINTNTYMIVTILTPLFDIQIILSFNSVRFHNM*FNTKENLL----IHN*ALFN*IFVN 476
           I I  NT+ ++T++     + I++S N+ +   +  N    LL    I+   L   I +N
Sbjct: 283 IIIIINTHKLLTVIINTHKLLIVISINTHKLLTVIINNTHKLLIIIIINTHKLLTVIIIN 342

Query: 475 YY*IL-ELLTTYHLIKIFTLD 416
            + +L  ++ T+ L+ + T++
Sbjct: 343 THKLLIVIINTHKLLTVITIN 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,682
Number of Sequences: 59808
Number of extensions: 292352
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)