Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00049
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor ...    40   0.012
BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor ...    40   0.012
BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.       40   0.012
BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor ...    40   0.012
BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor ...    40   0.012
BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor ...    40   0.012
AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor ...    40   0.012
BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor ...    39   0.022
BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor ...    39   0.022
AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor ...    39   0.022
BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor ...    36   0.12 
AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor ...    36   0.12 

>BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor 1B
           (centromeric) protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor 1B
           (centromeric) protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor 1A,
           telomeric protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor 1,
           long isoform protein.
          Length = 110

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTG 264
           M RGNQR+LAR KN KK  E+ K K   +    S +++++G
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSG 41


>BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 38.7 bits (86), Expect = 0.022
 Identities = 21/38 (55%), Positives = 24/38 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQER 255
           MTRGNQR+LAR KN KKQ +  K K   +  GLS   R
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAAR 36


>BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 38.7 bits (86), Expect = 0.022
 Identities = 21/38 (55%), Positives = 24/38 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQER 255
           MTRGNQR+LAR KN KKQ +  K K   +  GLS   R
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAAR 36


>AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 38.7 bits (86), Expect = 0.022
 Identities = 21/38 (55%), Positives = 24/38 (63%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQER 255
           MTRGNQR+LAR KN KKQ +  K K   +  GLS   R
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAAR 36


>BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 62

 Score = 36.3 bits (80), Expect = 0.12
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQER 255
           M RGNQR+LAR KN KK  E+ K K   +    S +++
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQ 38


>AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor 1,
           short isoform protein.
          Length = 62

 Score = 36.3 bits (80), Expect = 0.12
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQER 255
           M RGNQR+LAR KN KK  E+ K K   +    S +++
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQ 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,527,612
Number of Sequences: 237096
Number of extensions: 1233585
Number of successful extensions: 2071
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2071
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)