Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00049
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical ...    45   5e-05
Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.        28   6.1  
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    28   8.0  
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    28   8.0  

>AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical
           protein Y37E3.4 protein.
          Length = 82

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +1

Query: 142 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTG 237
           MTRGNQRDLAR KNQKK  + +K++ AS + G
Sbjct: 1   MTRGNQRDLAREKNQKKLADQKKRQGASGQDG 32


>Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical
           protein F19C6.2b protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 151 GNQRDLARAKNQKKQVEMQKKKNASEK 231
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 151 GNQRDLARAKNQKKQVEMQKKKNASEK 231
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373


>Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical
           protein T23G11.3 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 542 HVMKAD*VETENDLNIKKWCEDCHNHICISIYANLE 649
           H  KA+    E+DL++   CED  N + I + A LE
Sbjct: 261 HRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALE 296


>U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical
           protein C18B2.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 136 IRMTRGNQRDLARAKNQKKQVE-MQKKKNASEKTGLSL 246
           + M+  ++  L R  N  + ++ +QKK NASE TG SL
Sbjct: 148 MNMSEWDKESLCRGDNTFRHLKSLQKKYNASEMTGWSL 185


>U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 542 HVMKAD*VETENDLNIKKWCEDCHNHICISIYANLE 649
           H  KA+    E+DL++   CED  N + I + A LE
Sbjct: 261 HRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALE 296


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 127 NYLIRMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTGML 270
           ++LI   +G  +DLARAK+  K+V       A  K G+   +  +G++
Sbjct: 30  DHLIEAQKGGAQDLARAKDLNKEV-FNFLATAGSKYGVGFWKPGSGII 76


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 127 NYLIRMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERNTGML 270
           ++LI   +G  +DLARAK+  K+V       A  K G+   +  +G++
Sbjct: 124 DHLIEAQKGGAQDLARAKDLNKEV-FNFLATAGSKYGVGFWKPGSGII 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,448
Number of Sequences: 27780
Number of extensions: 241086
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)