Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00048
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   124   5e-30
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   121   5e-29
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    30   0.12 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    29   0.21 
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   3.5  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.5  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   8.0  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  124 bits (299), Expect = 5e-30
 Identities = 53/78 (67%), Positives = 66/78 (84%)
 Frame = +3

Query: 21  MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
           MT+K RN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+V++AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 201 MFQLPKLYAKLHYCVSCA 254
            + +PKLY KL YCVSCA
Sbjct: 61  EYTIPKLYIKLQYCVSCA 78



 Score = 35.1 bits (77), Expect = 0.004
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 361
           +HS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 79  IHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  121 bits (291), Expect = 5e-29
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +3

Query: 21  MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
           MT+K RN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+V++AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 201 MFQLPKLYAKLHYCVSCASTAKL 269
            + +PK+Y KL YCVSCA  A++
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARV 83



 Score = 34.7 bits (76), Expect = 0.006
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 361
           +H++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 79  IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 102 RCVPKDKAIKKFVIRNIVDSAAVRDI 179
           RCVPKDKAI   + +NI D   VRD+
Sbjct: 20  RCVPKDKAILNPLAKNIAD--VVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -1

Query: 161 RIYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 42
           +++DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 232 SLAYNLGSWNIGYTEASLISLTAAESTMFLITNFLIAL 119
           S AY +  W+I     S+++ T+ EST   +  +L+ L
Sbjct: 244 SRAYMIFYWSINVGSLSVLATTSLESTKGFVYAYLLPL 281


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 LSGTDRRKTEESVLLPRVTSLGT 335
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 248 MRLHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 343
           MR    + +        IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,766
Number of Sequences: 5004
Number of extensions: 24037
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)