Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00048
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   127   4e-30
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    29   1.4  
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    29   1.9  
01_06_1293 - 36050847-36051304,36052343-36052826                       28   2.5  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   7.7  
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           27   7.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  127 bits (306), Expect = 4e-30
 Identities = 54/83 (65%), Positives = 68/83 (81%)
 Frame = +3

Query: 21  MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
           MT K RNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIV+ AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 201 MFQLPKLYAKLHYCVSCASTAKL 269
            + LPKLYAK+H+CVSCA  A +
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHI 83



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 349
           +H+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 79  IHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>09_04_0042 -
           14055885-14056142,14057508-14057774,14057859-14059292,
           14059378-14059539,14059642-14059768,14059869-14060200,
           14060289-14061083,14061379-14061714,14061791-14062730,
           14063338-14063588
          Length = 1633

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 176 ISDRRRIYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITXLTSHVSNLRS 3
           +S+ R +    NH   D+    H P A+C  HS ++  + LG+  +T      ++L+S
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678


>02_05_1197 -
           34908382-34908582,34908664-34908837,34909239-34909337,
           34909444-34909644,34910229-34910336,34910498-34910882,
           34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 159 SAAVRDINDASVYPMFQLPKLYAKLHYCVSCASTAK 266
           SAA RD+ +  V+PM  L  LY +L   VS   TA+
Sbjct: 40  SAAERDLLNFMVFPMLLLRLLYGQLWITVSRHQTAR 75


>01_06_1293 - 36050847-36051304,36052343-36052826
          Length = 313

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 NDASVYPMFQLPKLYAKLHYCVSCASTAKLSGT 278
           N+AS YP  Q P LY  +  C    STA+   T
Sbjct: 175 NNASYYPQQQTPLLYPGMEVCPHDKSTAQPPAT 207


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 PQQSCQEQIEERQKNPYSSQE 318
           PQQS Q+Q EE+Q  P SS +
Sbjct: 617 PQQSQQQQPEEQQSIPQSSNQ 637


>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 230 APLLRVMRLHSKVVRNRSKKDRRIRTPPK 316
           +PL R++R    +    +KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,013,148
Number of Sequences: 37544
Number of extensions: 185846
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)