Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00048
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   127   4e-30
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   1.7  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   1.7  
U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    27   7.0  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    27   7.0  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    27   7.0  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    27   7.0  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  127 bits (306), Expect = 4e-30
 Identities = 56/83 (67%), Positives = 65/83 (78%)
 Frame = +3

Query: 21  MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
           MT K RN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIV++AAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 201 MFQLPKLYAKLHYCVSCASTAKL 269
            + LPKLY KLHYC++CA  +K+
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKV 83



 Score = 33.9 bits (74), Expect = 0.046
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPP 313
           +HSKVVRNRS++ RR R PP
Sbjct: 79  IHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 69  HVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYPMFQL-PKLYAKLH--Y 239
           H+K ++C NC+     +K+++  +IR+  + A   ++  A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 240 C 242
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 69  HVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYPMFQL-PKLYAKLH--Y 239
           H+K ++C NC+     +K+++  +IR+  + A   ++  A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 240 C 242
           C
Sbjct: 258 C 258


>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 204 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 347
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 204 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 347
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 204 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 347
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 134 LFDSLVLWHAPRAVCASHSFNVTTSMLGASSITXLTSHVSN 12
           L D LV W+  R V A     + T  L A  +  L  HVSN
Sbjct: 2   LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 204 FQLPKLYAKLHYCVSCASTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 347
           F++  L+ +L +  S  S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,014,865
Number of Sequences: 27780
Number of extensions: 145529
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)