Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00046
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 30 0.47
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 30 0.47
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 29 0.62
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 28 1.9
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 28 1.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.3
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha... 27 3.3
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 26 5.8
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 26 5.8
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 5.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 7.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 7.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 7.6
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 521 PSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDNVPGYLRPTRT 700
P S P+P+ KS + +V + + + + K+ PE +P +PG P +
Sbjct: 56 PVESSVPLPLPKRKSSVEKRAGSVASAVAAMSLSQNSGEKRTPE--EPRKLPGVPAPQKQ 113
Query: 701 SQ 706
S+
Sbjct: 114 SE 115
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.47
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 491 NQTSRRIRESPSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDN 670
NQ +++ +P LS++ PV R + I K T+ PR +S DK
Sbjct: 7 NQKQLKVKHAPQELSSKKPVSRFREVISEP-----KKFTRD--PRFDSLSGNLSKDKVKK 59
Query: 671 VPGYLRPTRTSQIKE 715
G+L R S+I++
Sbjct: 60 NYGFLNEYRVSEIQQ 74
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.62
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 518 SPSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPEN 655
SP+ LST + + + ET T KI S AP ESP + E+
Sbjct: 515 SPASLSTGTTEAEKEQQEKFKQETETEKIDVSYAPETESPTAKNED 560
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 530 LSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRP--ENDKPDNVPGYLRPTRT 700
L + P P S P+R + T+ + SA+ SP+Q P N P + P + +T
Sbjct: 6 LPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQHGQT 64
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +2
Query: 662 PDNVPGYLRPTRTSQ----IKEETIIHDTEVSSRRGVEFGVELRRRALN-VLQRAVRGA 823
PD P YLR T TS IKE + +S GV V L+R L V +RGA
Sbjct: 92 PDGTPDYLRLTLTSNVYEVIKETPLTKGVVISESTGVP--VYLKREDLTPVFSFKIRGA 148
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/88 (20%), Positives = 36/88 (40%)
Frame = +3
Query: 387 PKPETLRHKNDHPNVTEDEVEMNTTVIKTERSIESIKPQEEYAKVQVAYPQNHQSRDLNH 566
P E N PN ++ + +NT + + S + K +++ +K A RD
Sbjct: 151 PGLEDATSSNMSPNSVQNNMNLNTVALGSSTSSKRKKKKKKKSKANSASLNVDDQRDFEQ 210
Query: 567 RSDILLKRSQRKLQNLLHQEGNLRSSGL 650
+ + R Q L + G++R + +
Sbjct: 211 VYSTDVAITYRNGQALSYYNGSVRQASM 238
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 162 QIVQKKQLNYTRKLKISKHQPKKRLIKLRLRYNIKEQRTVKKAKALFENIA 314
+I ++ + R+LK + + KKR K +L+ +E+R ++A+ L E A
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAA 625
>SPBC21.04 |med8|sep15|mediator complex subunit
Med8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +2
Query: 458 HSN*NRAFNRINQTSRRIRESPSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGE 631
H N N ++I+ S + L T S P + P++ +TT + A P E
Sbjct: 47 HKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQEPLLTTLLRTKALPEVE 104
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 174 KKQLNYTRKLKISKHQPKKRLIKLRLRYNIKEQRTVKKA 290
K+Q + K +I K K+ + KL +YN KE++T+ +A
Sbjct: 410 KEQQDSVTKQRIEK--AKQEIEKLEAKYNSKEEKTLTEA 446
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 575 HTVETVTTKITKSAA-PRGESPKQRPENDKPDNV 673
H + TTK T S + P ESP+Q PE + D++
Sbjct: 449 HVKQLQTTKSTDSLSIPFVESPQQNPEEELSDSL 482
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +3
Query: 411 KNDHPNVTEDEVEMNTTVIKTERSIESIKPQEEYAKVQVAYPQNHQSRDLNHRSDILLKR 590
K + E +++ + + RSI + Q + K+Q P+ + + S L KR
Sbjct: 168 KESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKKEKSEKKESSMTLRKR 227
Query: 591 S 593
S
Sbjct: 228 S 228
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 399 TLRHKNDHPNVTEDEVEMNTTVIKTERSIESIKPQEEYAKVQVA----YPQNHQSR 554
+L+H P E+E N ++K +I S +E + VA P N+ SR
Sbjct: 125 SLKHIKAMPEEKRQEIEGNKEILKKSTTIRSTPVREPTKAISVASMSTSPSNYASR 180
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 449 LNFVLGYIRMVVFMSKGLRFRSLLINTNVGQLSF---YFDIFCFLCSRCNIL 303
LNF L ++ ++ + L+F S N + L YF F FLCS IL
Sbjct: 475 LNFSLSFVVAILLVP--LQFISFRFNRRLSLLFAVLTYFSTFIFLCSLSKIL 524
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 497 TSRRIRESPSRLSTESPVPRSKSPI--RHTVETVTTKITKSAAP 622
TS R PSR + P S SP+ TV+T T+ ++ +P
Sbjct: 245 TSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSP 288
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = +3
Query: 369 GVNQKTPKPETLRHKNDHPNVTEDEVEMNTTVIKTERSIE 488
G + +P T+ H DH N+ + E +++ + +E
Sbjct: 692 GSEINSSQPSTINHGTDHINIVSENKETTVSLLHGDVEVE 731
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 497 TSRRIRESPSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDNVP 676
++ R+ PS+L + +P+ + + K++ SA P P Q + + VP
Sbjct: 133 SNHRLHSMPSQLQPFNNASSYTTPMAPFTASFSNKVSHSAYPTRRLPSQAKKTSAIERVP 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,811
Number of Sequences: 5004
Number of extensions: 54537
Number of successful extensions: 234
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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