Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00046
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 36 0.040
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 34 0.12
11_06_0610 - 25449085-25453284 33 0.21
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 31 1.1
02_02_0008 + 6061508-6061624,6062468-6062566,6062636-6063039,606... 31 1.1
03_04_0172 + 18017164-18017313,18017389-18017499,18017719-180178... 30 2.0
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 29 4.6
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 4.6
>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 35.9 bits (79), Expect = 0.040
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Frame = +3
Query: 204 KISKHQPKKRLIKLRLRYNIKEQRTVKKAKALFENIASXXXXXXXXXXXXXXXXXGVNQK 383
KIS Q ++L +L LR +K + V +A + +A+ G +
Sbjct: 930 KISSVQVYRKLTQLGLRNAMKRRTKVPEAPLSAQELATQTDQML-----------GEHNC 978
Query: 384 TPKPETLRHKNDHPNVTEDEVEMNTTVIKT--ERSIESIKPQEEYAKVQVA--YPQNHQS 551
PKPET R + NV+ E NTT K+ E ++++IK + + KV + P Q
Sbjct: 979 DPKPETTRRRRKRQNVSHASYEDNTTDGKSSDEETLQAIKSRTKNKKVPLVGFSPSTSQH 1038
Query: 552 RD 557
+D
Sbjct: 1039 QD 1040
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 512 RESPSRLSTESPVPRSKSPIRHT-VETVTTKITKSAAPRGESPKQRP 649
R SP SP PRS+SP R + V+T ++ +S R SP++ P
Sbjct: 239 RRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSP 285
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 33.5 bits (73), Expect = 0.21
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 515 ESPSRLSTE-SPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDNVPGYLRP 691
+SP L+ E SP P KSP HT E+ + +S P +PK P + + P +
Sbjct: 880 KSPPTLTPEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAKS 939
Query: 692 TRTSQIKEETIIHDTEVSS 748
T + K H E SS
Sbjct: 940 TPPPEEKSPP-SHTPESSS 957
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 521 PSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRP 649
P + +P P KSP HT E+ + +S P +PK P
Sbjct: 933 PPSPAKSTPPPEEKSPPSHTPESSSPPSEESEPPPSPTPKSSP 975
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +2
Query: 521 PSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDNVPGYLRPTRT 700
P + SP R + HT + + + +A + RP+ +PD VP
Sbjct: 29 PQASAASSPPARGAADRSHTTPPSSGRRRRYSASASSAAAARPDPAEPDEVP-------V 81
Query: 701 SQIKEETIIHDTEVSSRRGVEFG-VELRRRALNVLQRAVRGAQR 829
S++KE+ + + + F V + + L+R+ RG QR
Sbjct: 82 SKLKEDIQKLQVSEAEIKALSFNYVAMLKEKEGALERSPRGVQR 125
>02_02_0008 +
6061508-6061624,6062468-6062566,6062636-6063039,
6064218-6064278,6064413-6064466,6064786-6064854,
6064993-6065058,6065162-6065230,6065448-6065537
Length = 342
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 486 ESIKPQEEYAKVQVAYPQNHQSRDLNHRSDILLKRSQRKLQNLLHQEGNLRS 641
E K +E+ ++ + + P++H SRDL+ SD L ++R+L + +L +
Sbjct: 193 EREKEKEQRSRKRFSRPKDHDSRDLSVSSDDLHSDAKRQLNKAIQMREDLEN 244
>03_04_0172 +
18017164-18017313,18017389-18017499,18017719-18017886,
18017985-18018098,18019070-18019126,18019797-18020475,
18021016-18021174,18021449-18021618
Length = 535
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 515 ESPSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDNVP 676
++ +R+S + PR S H V+TVT+ KSA+ S + ++ +VP
Sbjct: 255 DTSARISDDKSKPRPASREDHKVKTVTSAEAKSASADNASISNSEKQEQKKSVP 308
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = +3
Query: 378 QKTPKPETLRHKNDHPNVTEDEVEMNTTVIKTERSIESIKPQEEYAKVQVAYPQNHQSRD 557
Q+ KPE + + + N +++ + ++ + IKPQE+ K Q + Q +
Sbjct: 549 QQQTKPEQKKQQQLNTNKPQEQQQQ-------QQQKQQIKPQEKMGKEQTKPEEQQQQQK 601
Query: 558 LNHRSDILLKRSQRKLQNLLHQE 626
N + K+ Q+K Q Q+
Sbjct: 602 TNRPQEQQHKKPQKKQQQQQQQQ 624
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.1 bits (62), Expect = 4.6
Identities = 28/102 (27%), Positives = 44/102 (43%)
Frame = +2
Query: 521 PSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDKPDNVPGYLRPTRT 700
P RLS SP+PRS++P + T + + A + E+ + +N PD P L+ R
Sbjct: 18 PRRLS--SPLPRSRAPPSPSPSTSSRAKPRKVAAQPETDEAALDN--PDLGPFLLKQARD 73
Query: 701 SQIKEETIIHDTEVSSRRGVEFGVELRRRALNVLQRAVRGAQ 826
+ + E G +E RA L+R GA+
Sbjct: 74 AMVSGE----------GGGAARALEFAERAARALERRGEGAE 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,686,793
Number of Sequences: 37544
Number of extensions: 328217
Number of successful extensions: 1088
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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